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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtctacctacccatctccctccctcccactcccacccgttttccatctccccacgcggcttcacttgttggatcgccatcgcccccaaatctg...

Basic information

species Zea mays
transcript GRMZM2G000510_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000510_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g48040.1 (Oryza sativa), 5'ss of exon 1
-GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtctacc----------tacccatctccctccctcccactcccac--------ccgttttccatctccccacgcggcttcacttgttggatcg-ccatcgcccccaaatctg---
 |||  | |  || |||        ||| ||||| || |||  |||||||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||| |   || | |          |  ||   | |  | ||||  |||| |            || |   |    | |   ||   ||  ||  ||||||   ||      |  ||| |   
CGCAA-ACGCCGCCGCCGGTATGCCGGAGCACGGGTCGAAGCCCGACATCTCCTTCGCCGGCCGCTTCACCGCAAGCGCCATCGCTGCATGCTTCGCTGAGgtatccaatcaatccccttcgatttctccgatttctcctctcctcctcctagagagagcattattataggtagatcgagaaggaaccagctgacggatcgatgatttggttccgatccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31349105|gb|CD433462.1|CD433462
EST:     ATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCTGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: ATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211209142|gb|FL374139.1|FL374139
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211047692|gb|FL371292.1|FL371292
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|78115816|gb|DV534204.1|DV534204
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|76291091|gb|DV030659.1|DV030659
EST:     GCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: GCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211227505|gb|FL377297.1|FL377297
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211100013|gb|FL396408.1|FL396408
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCA
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCA
EST: gi|149110174|gb|EE293989.2|EE293989
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211395191|gb|FL388870.1|FL388870
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|76911479|gb|DV164289.1|DV164289
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211415548|gb|FL372632.1|FL372632
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211234205|gb|FK951233.1|FK951233
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211253778|gb|FL369138.1|FL369138
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|50324459|gb|CO519585.1|CO519585
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|78109062|gb|DV527479.1|DV527479
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|67028232|gb|CO456981.1|CO456981
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211229469|gb|FL370963.1|FL370963
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|76292715|gb|DV032283.1|DV032283
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|71437614|gb|DR818664.1|DR818664
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211285989|gb|FL388300.1|FL388300
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|78108615|gb|DV527033.1|DV527033
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211421416|gb|FL412840.1|FL412840
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211506968|gb|FL409468.1|FL409468
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211207011|gb|FL394633.1|FL394633
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|148947408|gb|EC892822.2|EC892822
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|71437391|gb|DR818441.1|DR818441
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|148932353|gb|EC875981.2|EC875981
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211159830|gb|FL401308.1|FL401308
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|148986615|gb|EE030385.2|EE030385
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTTGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|88751922|gb|DY536063.1|DY536063
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAAAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|31348998|gb|CD433355.1|CD433355
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|50333857|gb|CO528983.1|CO528983
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|149072257|gb|EE160513.2|EE160513
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|76294190|gb|DV033758.1|DV033758
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211527528|gb|FL409931.1|FL409931
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|76281516|gb|DV021084.1|DV021084
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|93015136|gb|EB640656.1|EB640656
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|148954532|gb|EC899968.2|EC899968
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|89249688|gb|DY621474.1|DY621474
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|93281478|gb|EB673742.1|EB673742
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|71303282|gb|DR787744.1|DR787744
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|211234204|gb|FK951232.1|FK951232
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATAGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|149014447|gb|EE044057.2|EE044057
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGATG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|31363588|gb|CD447945.1|CD447945
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|148931428|gb|EC874386.2|EC874386
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
EST: gi|71447490|gb|DR828540.1|DR828540
EST:     CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAG                         ATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG
genomic: CCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 165

GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAGAACGTCGTCGCCGCCGCCGCCTCCGGGGACGCCGCGCCAGCGCTTCCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 357

GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAGAACGTCGTCGCCGCCGCCGCCTCCGGGGACGCCGCGCCAGCGCTTCCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 488

GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAGAACGTCGTCGCCGCCGCCGCCTCCGGGGACGCCGCGCCAGCGCTTCCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 251

GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtc ... cttctcgcagATATGTACCATCCCGCTCGACACGGCCAAGGTCAGGCTCCAGCTGCAGAAGAACGTCGTCGCCGCCGCCGCCTCCGGGGACGCCGCGCCAGCGCTTCCCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCAGGGAGCAGCCATGCCAGGGGACCACGGCTCCAAGGGCGACATCTCCTTCGCCGGACGCTTCACGGCCAGCGCCATCGCAGCATGCTTCGCAGAGgtaactcgtctacctacccatctccctccctcccactcccacccgttttccatctccccacgcggcttcacttgttggatcgccatcgcccccaaatctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccccc