1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTGTATCAGAATATTCACATGCCAGTGTTACTAATACTTGTCAGTTGGGAAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttcaatttttaatgttacttctatctgttcaatccgtgggtctttttggtgttataattttatgagtagatttaaaagactagaatgcttaga...
species | Zea mays |
transcript | AC217665.3_FGT005 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTAEST: gi|108823867|gb|EC277875.1|EC277875
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCCGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTAEST: gi|211058488|gb|FL335139.1|FL335139
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGEST: gi|61118680|gb|DN559641.1|DN559641
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCG
EST: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTAEST: gi|76294445|gb|DV034013.1|DV034013
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTAEST: gi|6095394|gb|AW120061.1|AW120061
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGNAAAGAGATTGTTAEST: gi|211304180|gb|FL452361.1|FL452361
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
EST: CCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTAEST: gi|24764590|gb|CA399754.1|CA399754
genomic: CCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
genomic: AAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTACATCGGACGAGGCTGGTAAAGAGATTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTATCAGAATATTCACATGCCAGTGTTACTAATACTTGTCAGTTGGGAAGCACTACCCTGAAGGACGGCCGCACCATCAATGTTATTGATACACCAGgtaagacttcaatttttaatgttacttctatctgttcaatccgtgggtctttttggtgttataattttatgagtagatttaaaagactagaatgcttaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG