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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATATAGGCCTTTCAATGGGTATTTCAGAGACAGAAGTTGCTAAAGAAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttggtagaattatccaagaggacctaactgagttcagcactgattttctttccttgtaaaaaataattccacttgtttggagttcacacattgaagtcctgactcctgaacatagcaaacatgcatgccttttttttggtataatgtgcatttctaggctataattcttgttgcag

Basic information

species Zea mays
transcript AC214484.3_FGT001
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC214484.3_FGT001 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g40530.1 (Oryza sativa), 5'ss of exon 11
GCCGATATAGGCCTTTCAATGGGTATTTCAGAGACAGAAGTTGCTAAAGAAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttggtagaattatccaagaggacctaactgagttcagcactgattttctttccttgtaaaaaataattccacttgtttggagttcacac-attgaagtcctgactcctgaacatagcaaacatgcatgccttttttttggtataatgtgcatttctaggctataattcttgttgcag
||||||||||| || |||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||  ||||||| |||||||| |||||||||||       ||  || |    ||    |||           || |  |||  ||  | ||  |||||  ||||       ||   |||| || ||| |||| |  ||   |||    |||                                                         
GCCGATATAGGTCTCTCAATGGGCATTTCAGGGACAGAAGTTGCCAAAGAAAGTTCTGACATTATAATCTTGGATGACAACTTCACATCAGTTGTGAAGgtttgttt-------ttccccgaacaaactattctg-----------gaatacctt--ctaatgaaggataatgtcact------aagcaaacaccatggaattcctcataccctcacac--taaatt-------------------------------------------------------