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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCGCCCGGTGGCAGCGAGGAGCCCATGTACCCGCCGGCGAAGCTGGAGCAGTTCTACGATTTCTTCACCTTCTCGCACCTCACGCCGCCGCTGCACTgtgagtgctcgcaccagctgccactctcttggattttgattttgttgatgcagtttttttgttgattcagaattgggtaggtttggcaagttgcatacgggaatcttttcctcccagtttctctgaatagaatgtgactggttgcag

Basic information

species Zea mays
transcript AC209454.3_FGT001
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC209454.3_FGT001 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G24430.1 (Glycine max), 5'ss of exon 2
-ACGGCGCCCGGTGGCAGCGAGGAGCCCATGTACCCGCCGGCGAAGCTGGAGCAGTTCTACGATTTCTTCACCTTCTCGCACCTCACGCCGCCGCTGCACTgtgagtgctcgcaccagctgccactctcttggattttgattttgttgatgcagtttttttgttgattcagaattgggtaggtttggcaagttgcatacgggaatcttttcctcccagtttctctgaatagaatgtgactggttgcag
  || |    | || |   ||     | ||||  || ||  | | ||| |  |||||||||||||||||  |||| |||||||| ||||||||| | || |||||||      |     |       | ||  || |  ||| |   | ||   || ||| |||  ||     ||    |  ||   | |     || |    | |||                                        
AGCGACAAA-GCTGACGCTGACATCTCTATGTGTCCACCTCCCAGGCTCGGACAGTTCTACGATTTCTTTTCCTTTTCGCACCTTACGCCGCCGTTTCAATgtgagt-----tatttatttatttatttttaaatatctattctaccg-tgtttttctttagtttgtt---gctttttcatcttattccaacccaatgcaattagcttgg--------------------------------------