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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTACCCGCCGCCGAAGCTCGAGCAGTTCTACGATTTCTTCACCTTCTCGCACCTCACGCCGCCGCTGCACTgtgagtgctcgcgccagctgccactctcttggattttgatttcgttgatgcagttttttttgctgattcagaattgagtaggtttggcgagttgcatacgggaatctttttctcccagtttctctgaatagaatgtgactgattgcag

Basic information

species Zea mays
transcript AC197034.3_FGT013
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC197034.3_FGT013 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G24430.1 (Glycine max), 5'ss of exon 2
---------------------------ATGTACCCGCCGCCGAAGCTCGAGCAGTTCTACGATTTCTTCACCTTCTCGCACCTCACGCCGCCGCTGCACTgtgagtgctcgcgccagctgccactctcttggattttgatttcgttgatgcagttttttttgctgattcagaattgagtaggtttgg-cgagttgcatacgggaatctttttctcccagtttctctgaatagaatgtgactgattgcag
                           ||||  || || || | |||||  |||||||||||||||||  |||| |||||||| ||||||||| | || |||||||  |             | |   ||   |||  || ||  |  | | || |||||   |  ||      |   |    ||   | |     || |    | |||                                        
AGCGACAAAGCTGACGCTGACATCTCTATGTGTCCACCTCCCAGGCTCGGACAGTTCTACGATTTCTTTTCCTTTTCGCACCTTACGCCGCCGTTTCAATgtgagttatt-----------tatttatttatttttaaatatctattctaccgtgtttttctttagtttgttgctttttcatcttattccaacccaatgcaattagcttgg--------------------------------------