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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTAATTTGGGGCCATGAGCCTGAATGTCTGATTGATCCACAGgtaacaagacatattagtatttaaaaagaggggaagaggtgcaatttagcatatgtatttttagtcaagtgttctgtctttctgcttttgtatttaattttaactttgttttccttctatcaactactcacag

Basic information

species Zea mays
transcript AC191523.3_FGT001
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC191523.3_FGT001 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g08030.1 (Oryza sativa), 5'ss of exon 8
-ATGGTAATTTGGGGCCATGAGCCTGAATGTCTGATTGATCCACAGgtaacaagacatattagtatttaaaaagaggggaagaggtgcaatttagcat------atgtatttttagtcaagtgttctgtctttctgcttttgtatttaattttaactttgttttccttctatcaactactcacag
 | || ||  |      ||| || | ||||      |  | |  || |  |  ||| |  || |||      |   |     | |   |||| | ||       |   ||||| ||  |       | |||| ||  | || | |  | | |||  ||| ||||   |||| | |    |  |||
AAAGGGAAGCTCAACAAATG-GCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCACCAGgtaacacattttgagctactgcaaatttcttactaatgtt-tgtcaagtgttatttttatttttaatctagctaaactttgcag