ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgatttttctatgggatttcgatggggattccttgatctgcgtttctactggctgttgatgcctgcag

Basic information

species	Zea mays
transcript	AC149818.2_FGT006
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 1

-CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgatttttctatgggatttcgatgggga---------ttccttgatctgcgtttctactggctgttgatg-cctgcag------------------------------------------------------------------------------
   | |||| ||| |   || |      | |      || ||  || ||    |||||||||||| || ||||||||||| ||||||||| | |||||||||||||||| ||||    | |||   |  ||||| |  |||     |  | |||         || |  | | ||  | | | ||  || ||| ||  || ||                                                                               
AGGAGGAGGAGGAGAAAAAGAAATCCA-ATCTTTTTCTTTTTTCTTCTTGTGTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatcttgtcctttatttatttattttttttggggggggggggggtggaattgtgtttttgcccggtttgattcttttctttctattggtggtctccatcgtctaatctgatgtgttgttgtttgttgttttgggggtggggggattggggattttcttggtttcttgttgttgcag

upper sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA09G39370.4 (Glycine max), 5'ss of exon 1

CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgatttttctatgggatttc-gatgggga---ttccttgatctgcgtttctactggctgttgatgcctgcag
|        |||||  |   |  | | | |    |   |          |   || |||||||| |||||||||||||| ||||||||| | ||||| |||| |    ||| |  |    |||    |  |||| ||    ||||  ||||||    |||||   |||| ||      || || ||| |  | | ||
CTTGCCAAAGGAAAAAGGCTAAAGAGAAACCCACACACACACACACACACAGAAATATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTgttaatcctttctctctcaattcatcaaagtttcaatcttttttctaatggggtctcttcctgattctgggtcctctttgtcttttgttttccgtag

upper sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G07540.1 (Glycine max), 5'ss of exon 1

CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAG--ATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgat-ttttctatgggatttcgatggggattccttgatctgcgtttctactggctgttgatgcctgcag-------------------------------------------
  |||   |  |     || |      |    |  |  |  |           ||   |||||||||||||||||||| || ||||||||| | ||||| |||| |    |      | | ||  | |    |||||  |   ||||| ||     ||      | |   ||   | ||| |||  | |  ||                                              
--AAGTAACTAAGGAAAAGAAAACACAACACACACACAAAGGAAAAAACAGAAAAACCATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTgttaa---tccaccacttcttctgttttccttttcccttctatttccattaaagttataattttttttttctaattgggtgtctaagtttgactcttgattctgattttgatgttagtttttttttttaattaatag

upper sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G07540.2 (Glycine max), 5'ss of exon 1

CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgat-ttttctatgggatttcgatggggattccttgatctgcgtttctactggctgttgatgcctgcag-------------------------------------------
 ||  |  |  | |   ||||      | | |  ||                 |  |||||||||||||||||||| || ||||||||| | ||||| |||| |    |      | | ||  | |    |||||  |   ||||| ||     ||      | |   ||   | ||| |||  | |  ||                                              
ACACAACACACACACAAAGGAA---AAAACAGAAAA-----------------ACCATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGTTAA---TCCACCACTTCTTCTgttttccttttcccttctatttccattaaagttataattttttttttctaattgggtgtctaagtttgactcttgattctgattttgatgttagtttttttttttaattaatag

upper sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G46940.1 (Glycine max), 5'ss of exon 1

-CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAG-ATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgatt----tttctatgggatt-tcgatggggattccttgatctgcgtttctactggctgttgatgcctgcag---------------
 | ||   |  |||| ||   |||  ||   | | ||  |              ||  |||||||| |||||||||||||| ||||||||| | ||||| |||| |    ||| |  |    |    | ||     |||| ||    || |  ||||||  || |   | |  ||| ||  |    | |  |   ||                  
GCTAAAGAGAAGAAAAGGCAAAGCAAGG---GACCAACCAAAACACACACAGAGAAACATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGttaatcctttctctctctctcaattcatcaaagtttcaatctttttgttaatggggtctcttccctttctgttcctgattctgggtcctctttgtcttttctcttccgtagg

upper sequence: AC149818.2_FGT006 (Zea mays), 5'ss of exon 1
lower sequence: PP1S161_122V6.1 (Physcomitrella patens), 5'ss of exon 1

CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgatttttctatgggatttcgatggggattcct-tgatctgcgtttctactg----gctgttgatgcctgcag-----
                                                        ||||| || ||||||||||| |||||||||||| | |||||||||| ||  |    |||  |  ||   || ||||| | ||| |||    ||| | ||    ||   ||   ||  | ||    | | ||| |    | ||     
--------------------------------------------------------ATGTCATCCCCAAGCAAGCGGCGGGAGATGGACGTGATGAAGCTgtaag--tcccctggtttaattgtttgctttttgt-tggaattgttttggtggttttggtgcggtgtagtttcagtgcttagtttttggtattggtaggattg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|32851059|gb|CD990740.1|CD990740

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|17929609|gb|BM266569.1|BM266569

EST:     CCAAGCAAGCGCGGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211179976|gb|FL167738.1|FL167738

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182384|gb|FL167752.1|FL167752

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182372|gb|FL167740.1|FL167740

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|32934193|gb|CF039005.1|CF039005

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182381|gb|FL167749.1|FL167749

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182383|gb|FL167751.1|FL167751

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211179974|gb|FL167736.1|FL167736

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182378|gb|FL167746.1|FL167746

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|91049729|gb|EB160147.1|EB160147

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|33103078|gb|CF063038.1|CF063038

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|50325069|gb|CO520195.1|CO520195

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|76287410|gb|DV026978.1|DV026978

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|94478196|gb|EB707154.1|EB707154

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACA
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACA

EST: gi|211182375|gb|FL167743.1|FL167743

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182379|gb|FL167747.1|FL167747

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211541024|gb|FL000899.1|FL000899

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACMAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182373|gb|FL167741.1|FL167741

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182371|gb|FL167739.1|FL167739

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|37401744|gb|CF638239.1|CF638239

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|32858241|gb|CD997922.1|CD997922

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGNNNATGGTGAACGATGGGATGCAGGA
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAG---ATGGTGAACGATGGGATGCAGGA

EST: gi|211182385|gb|FL167753.1|FL167753

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211179973|gb|FL167735.1|FL167735

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211179975|gb|FL167737.1|FL167737

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182380|gb|FL167748.1|FL167748

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|60359485|gb|DN226458.1|DN226458

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|211182382|gb|FL167750.1|FL167750

EST:     CCCAAGATGTCTTCTCCAAGCAAGCG-CGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

EST: gi|6020463|gb|AW065391.1|AW065391

EST:     CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCT                         GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: CCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 76

CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattt ... atgcctgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 111

Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 130

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 64

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAGAGGCGGAAAGGGAGGAGCGTGGAGCGGCGAATTATTGTTTGTTTCCCCAAGATGTCTTCTCCAAGCAAGCGCCGGGAGATGGACCTCATGAAGCTgtgaggattttgtggcgtgtttcggtgatttttctatgggatttcgatggggattccttgatctgcgtttctactggctgttgatgcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC