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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTATTCGTGTACATGGATATGGAGGAAACCCTGACCGCCTTGGTATTTGTCCTTTCTCATGCTCGCCGTCTGAATGTTTCGGTTGTGGTCTAGCAGgttccataaatttgtattgttaatccacgcagcatcgctggcagtgcttggggagaagacaacattgatgtctccagatgttcttgtagcccgtggtgtgccctgctgtag

Basic information

species Zea mays
transcript AC149475.2_FGT005
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC149475.2_FGT005 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g05680.1 (Oryza sativa), 5'ss of exon 2
GAAGTTATTCGTGTACATGGATATGGAGGAAACCCTGACCGCCTTGGTATTTGTCCTTTCTCATGCT-CGCCGT-CTGAATGTTTCGGTTGTGGTCTAGCAGgt--tccataaatttgtattg-ttaatccacgcagcatcgctggcagtgcttggggagaagacaacattgatgtctccagatgttcttgtagcccgtggtgtgccctgctgtag
   || | | |      | | |  | |   ||| || |   ||   |   |  |  |     ||| |  ||| | ||| | ||    ||| ||     |   |   || ||| |    | ||  |||||  | |      |       ||  ||  |                                                           
--CGTCACTAGCAGTGCTTGGTGAGAAAACAACACTAATGTCCCCAGAGGTCCTTATAGACAATGgtgtgccctgctgtaggtacaagttctgaaaccgtcagcaatcaatacaccaatcttaattaatttatgtgttgacatgcattgtatttcag-----------------------------------------------------------