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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtaccttttgaaatagagggaaaatttccccaattattactttggatgcagcatccttatggatagtattggatttggaatacaaatgatacacctttagtagctcatacttttaacaacttattcag

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 9
GGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtaccttttgaaatagagggaaaatttccccaattattactttggatgcagcatccttatggatagtattgga--tttggaatacaaatgatacacctttagtagctcatacttttaacaacttattcag
||||  |||||||||||  | |||||||||||||| |||||||| ||||||||||||||||  |||||  |||  |  |                        ||||||  ||  || |||    |||| || ||   |||| |  | ||  | | |||| ||  |||||   |||                         
GGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgtgaccat------------------------attatt--ttacgaagcaattaccttgtgaatgtaattgaacatctgagaaagaaattatcaaccttatttag-------------------------

upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 9
GGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtaccttttgaaatagagggaaaatttccccaattattactttggatgcagcatccttatggatagtattggat--ttggaatacaaatgatacacctttagtagctcatacttttaacaacttattcag
||||  ||||| |||||  | |||||||||||||| |||||||| ||||||||||||||||  |||||  |||                        | ||   |||||  ||  || |||    |||| || ||   ||||      || || | |||| ||  |||||   |||                         
GGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgt------------------------taccatgttatt--ttacgaagcaattaccttgtgaatgtaattgagcgcctgaaaaagaaattatcaaccttatttag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825250|gb|FQ417971.1|FQ417971
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|110688026|gb|EE066106.1|EE066106
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCGACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|351042224|gb|FQ442691.1|FQ442691
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGTAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|30302041|gb|CB978835.1|CB978835
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|351028680|gb|FQ446353.1|FQ446353
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|29785203|gb|CB341997.2|CB341997
EST:     CAAGTCGGCAG                         GTAAGGAAGATCACATTTATCAGGCTCAACAGCTGTCGGAAAGAAGTTGAT
genomic: CAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTA-CAGGCTCAACAGCTGTCGGAAAGAAGTTGAT
EST: gi|351022813|gb|FQ428722.1|FQ428722
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|349827719|gb|FQ422587.1|FQ422587
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|110712816|gb|EE088195.1|EE088195
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|77587321|gb|DV222801.1|DV222801
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|349823645|gb|FQ415055.1|FQ415055
EST:     TCTTTGGAAATGCTCCTGAAATGGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCA
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCA
EST: gi|33407740|gb|CF213367.1|CF213367
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGT
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGT
EST: gi|161718701|gb|FC066339.1|FC066339
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCGACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|349832930|gb|FQ423052.1|FQ423052
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|34543124|gb|CF511356.1|CF511356
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|110393201|gb|EC958271.1|EC958271
EST:     TTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCGACAGCTGTCGGAAAGAAGTTGATG
genomic: TTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|110377270|gb|EC942333.1|EC942333
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|110685428|gb|EE062138.1|EE062138
EST:     CTTTTGGAA-TGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGA-GATCACATTTACAGGCTCA-CAGCTG
genomic: CTTT-GGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTG
EST: gi|349824141|gb|FQ417528.1|FQ417528
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACA
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACA
EST: gi|29785173|gb|CB341929.2|CB341929
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|351012714|gb|FQ430277.1|FQ430277
EST:     TCTTTGGGAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCA
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCA
EST: gi|349828464|gb|FQ417206.1|FQ417206
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCA
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCA
EST: gi|30251721|gb|CB969454.1|CB969454
EST:     TTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|351028364|gb|FQ427260.1|FQ427260
EST:     TCTTTGGAGATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
EST: gi|351016508|gb|FQ423935.1|FQ423935
EST:     CTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGGCA-GTCGGCAA                         GTAAGGAAGATCACATTTAC
genomic: CTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTG-CAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTAC
EST: gi|351033667|gb|FQ462197.1|FQ462197
EST:     TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAG                         GTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG
genomic: TCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtacc ... acttattcagGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATG