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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtttctccttctccctctatttgacatgtgcctgacacatgcttttgtattaatttagtaacatggttatgctctttttgatgttcag

Basic information

species Vitis vinifera
transcript Vv19s0085g00600.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 9
GTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtttctccttctccctctatttgacatgtgcctgacacatgcttttgtattaatttagtaacatggttatgctctttttgatgttcag-------------------------
||||| |||||||||||||| || ||||||||| | ||||||||||| |||||||| ||||||||    | |    |  ||||      || |    |       |   | |  || |||  | |  |       | ||   |  |||                          
GTTGTCCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGgttttctttcccttatgaattttgtcattgtcaaggatggagactgccaatttttcagtctcctcatatcatgttgttcattagtcataacagacttgctttcctatattcag

upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G051004_T01 (Zea mays), 5'ss of exon 9
GTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtt----------tctccttctccctctatttgacatgt-gcctgacacatgcttttgtatt--aatttagtaacatggttatgct-ctttttgatgttcag
||||| |||||||||||||| ||||| |||||  | ||||||||||| |||||||| |||||||          | || | |    ||||  ||  | ||    || ||  | | |   | ||  || | | |  ||||   ||| | || |   |||| |||
GTTGTACATGAGGAATTTGGCATCGTGGAGGGCCTTATGACAACTGTTCATGCCACAACAGgttggttactggctttcatccagtgtctacctgttaagtcatttgccattttcatgcattttcaaaataattgtcatgagcatgttactgtaccatgtccag

upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 9
GTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtt----------tctccttctccctctatttgacatgt-gcctgacacatgcttttgtatt---aatttagtaacatggttatgct-ctttttgatgttcag
||||| |||||||||||||| ||||| |||||  | ||||||||||| ||||| || |||||||          | |  | |    ||||  ||  | ||    || ||  | | |   | ||   || |   |  ||||   ||| | ||||   |||| |||
GTTGTCCATGAGGAATTTGGCATCGTGGAGGGCCTTATGACAACTGTTCATGCAACAACAGgttggcaactgacttttatccagtgtctacctgttaagtcatttgccattttcgtgcattttcaaaaatggttgtcatgaaaatgttactttaccatgtccag

upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtttctccttctccctctatt-tgacatgtgcctgacacatgcttttgtattaatt-tagtaacatg---gttatgctctttttgatgttcag
|| || |||||||||||||||||  |||| || || ||||||||||| || || ||||||||| | |    ||  ||||  |    ||  |  ||||   ||| |  |    | |||  | |||| ||   ||| || |  ||||    |||||
GTGGTGCATGAGGAATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGgtctatataacttactctcctgctgcagatcactga---atgttgataacctgattacactaacctgtgtgttttggttattttttctttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856406|gb|DT005461.1|DT005461
EST:     GGAATTTGGTATTGTTGAAGGTTTAATGACAACTGTGCATGCCACTACAG                         CCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCC
genomic: GGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtttctcctt ... tgatgttcagCCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCC
EST: gi|30131309|gb|CB916648.1|CB916648
EST:     GGAATTTGGTATTGTTGAAGGTTTAATGACAACTGTGCATGCCACTACAG                         CCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCC
genomic: GGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGgtttctcctt ... tgatgttcagCCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCC