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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGgtaggtactcagcattgcataggtccaagtacattccatatcttattgacagttcttttccaggttaatcacatggaatttttgctagcactagactttc...

Basic information

species Vitis vinifera
transcript Vv19s0015g01320.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 10
GACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGgtaggtactcagcattgcataggtccaagtacattccatatct-tattgacagttcttttccaggttaatcacatggaatttttgctagcactagactttc----
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||| | || ||    || | |  ||   |||  ||  || ||| ||       || | | | |||  | |      || | |||    | |  ||||    
GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgtaagtatt-agtatgttgtatggctgag---attgaattgctatatagaattactgttgctatggtaaatagacaattcttattctaat-ttcggttttcatgc

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G44920.1 (Glycine max), 5'ss of exon 8
GACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGgtaggtactcagcattgcataggtccaagtacattccatatcttattgacagttcttttccaggttaatcacatggaatttttgctagcactagactttc
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||| | |       || | |  |   |  | || | | || |||  |  |          ||    |  |  | ||| |    |     | || ||
GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgtaagtattgaattgcttattgctatatagaattaccttttttttttggtaaatagacaatgctttttctagtttcagtttgtatgtgtgtgtggctgtc

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G21910.1 (Glycine max), 5'ss of exon 6
GACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGgtaggtactcagcatt-gcataggtccaagtacattccat-atcttattgacagttcttttccaggttaatcacatggaatttttgctagcactagactttc
||||||||||||||||| ||||| |||||||| ||||||||||||||||||| || | ||| |    |||   || |     |  | |||  || |   ||| ||       || | | | |||  | |      |||| |||    |||  ||  
GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGgcaagtattatatatttatattgtatggatgagattgaattactatatagaattactgttgctatggtaaatataaaatgctttttctaattttagtttt--