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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAGgtaatgttctattaaacttctttattataaatccttttgctaattttggttggttggtatttttcagactgaatgatgtgcactatgttaatgtttagat...

Basic information

species Vitis vinifera
transcript Vv19s0014g04740.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G042398_T01 (Zea mays), 5'ss of exon 10
AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAGgtaatgttctattaaacttctttattataaatccttttgctaattttggttggttggtatttttcagactgaatgatgtgcactatgttaatgtttagat---
|||||     | || || || |||||||||||||||||||| ||| |||||||||       ||    ||| ||| ||||   |||| |  |   |||    | | | |  | ||   ||| | |  |    | | | ||    |||| ||   
AAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtgggacttgtttttcgttaatatatg-ccttgtatttcgtttaaaggatcgttgatcttgtcactaattttta-atagtcttttgg-atttaaatatc

upper sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G042398_T02 (Zea mays), 5'ss of exon 8
-------------------------------------------------AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAGgtaatgttctattaaacttctttattataaatccttttgctaattttggttggttggtatttttcagactgaatgatgtgcactatgttaatgtttagat---
                                                 |||||     | || || || |||||||||||||||||||| ||| |||||||||       ||    ||| ||| ||||   |||| |  |   |||    | | | |  | ||   ||| | |  |    | | | ||    |||| ||   
TTTTCTGGTATAGTAACTGTTCCATTTGTTTCTTTTGATAATGGTGTAGAAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtgggacttgtttttcgttaatatatg-ccttgtatttcgtttaaaggatcgttgatcttgtcactaattttta-atagtcttttgg-atttaaatatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352786282|gb|FQ478893.1|FQ478893
EST:     AATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG                         GAAGCTGTTGATTGTCCTGAATGGATTGTCCCATTTCATGTCTTCAAATCA
genomic: AATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAGgtaatgttct ... tttgttgcagGATGCTGTTGATTGTCCTGAATGGATTGTCCCATTTCATGTCTTCAAATCA
EST: gi|22011789|gb|BQ796823.1|BQ796823
EST:     AATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG                         GATGCTGTTGATTGTCCTGAATGGATTGTCCCATTTCATGTCTTCAAATCA
genomic: AATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAGgtaatgttct ... tttgttgcagGATGCTGTTGATTGTCCTGAATGGATTGTCCCATTTCATGTCTTCAAATCA