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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAAATTGCAGAAGAGGCTTGTAAGAACTACAGAGTCACTGGTACGATTTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAGgtctgggtatcctttgttttgatttggttcaatcagcattcacttttctcagcacttttctataagtcatatatttcatatgcaacatgcttgttgagtt...

Basic information

species Vitis vinifera
transcript Vv19s0014g00220.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362051|gb|EC925558.1|EC925558
EST:     TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAG                         CAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
genomic: TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAGgtctgggtat ... ctctcttcagCAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
EST: gi|33405289|gb|CF210916.1|CF210916
EST:     TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAG                         CAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
genomic: TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAGgtctgggtat ... ctctcttcagCAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
EST: gi|351018695|gb|FQ424802.1|FQ424802
EST:     TTCGGGAAACCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAG                         CAAAACCGGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
genomic: TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAGgtctgggtat ... ctctcttcagCAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
EST: gi|110378888|gb|EC944044.1|EC944044
EST:     TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAG                         CAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA
genomic: TTCAGGAAATCTAATGAAAGCATCTCGGCCACCACCAAGGGTACCAACAGgtctgggtat ... ctctcttcagCAAAACCAGGTAGAGTTGTGGGGCCTGTCCTACCTTACGAGAATGGAAGAA