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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCCTGCACTTCTGCTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGGCTTCCAGCCCTGGAGCCATATGCTCGCCTATTTCATCGgtgaatttccatacctttctctgtgggtaactttttatggaaaacatttcctaatttattctttcttccttttatcttttttccttttatcttttttccttttttggtggtggggttatctggtttag

Basic information

species Vitis vinifera
transcript Vv18s0157g00020.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0157g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G30980.1 (Glycine max), 5'ss of exon 1
CAGTTCCTGCACTTCTGCTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGGCTTCCAGCCCTGGAGCCATATGCTCGCCTATTTCATCGgtgaattt-----ccatacctttctctgtgggtaactttttatggaaaacattt-cctaatttattctttcttccttttatcttttttccttttatcttttttccttttttggtggtggggttatctggtttag
| || ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||  | ||||| ||||| |||||||||||  |||||||| ||| | |||       ||||||||||   |   ||  | || || ||   ||| | ||| |   | | | | | |   | |  |||                                                 
CTGTCCCTGCACTTTTGCTTCCTCCTCCAACGACAGCTTTGGATGAGCATCTTGTTGCTGGATTACCAGCTCTGGAACCATATGCTCGTTTATTTCATAGgttattttgaacttaatacctttcttgttttttagttgttcatagagttcatctgcctgacaaaatatatatacacctaacatttgcag---------------------------------------------

upper sequence: Vv18s0157g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G36600.1 (Glycine max), 5'ss of exon 8
CAGTTCCTGCACTTCTGCTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGGCTTCCAGCCCTGGAGCCATATGCTCGCCTATTTCATCGgtgaatt-----tccatacctttctctgtgggt-aactttttatggaaaacattt-cctaatttattctttcttccttttatcttttttccttttatcttttttccttttttggtggtggggttatctggtttag
| || ||||| ||| |||||||||||||||| |||||| ||||||||||||| ||||||||  | ||||| ||||| |||||||||||  |||||||| ||| | ||     |  |||||||    |||   | |  | || || ||   ||| | ||| |   | | | | | |   | | ||||                                                 
CTGTCCCTGCGCTTTTGCTTCCTCCTCCAACGACAGCTCTGGATGAGCATCTTGTTGCTGGATTACCAGCTCTGGAACCATATGCTCGTTTATTTCATAGgttattttgaacttaataccttatcttgttttttagttgttcatagagttcatctgcctgagaaaatatatatacacctaacctttgcag---------------------------------------------

upper sequence: Vv18s0157g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G07240.1 (Glycine max), 5'ss of exon 8
CAGTTCCTGCACTTCTGCTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGGCTTCCAGCCCTGGAGCCATATGCTCGCCTATTTCATCGgtga-----atttccatacctttctctgtgggtaactttttatggaaaacattt-cctaatttattctttcttcct--tttatcttttttccttttatcttttttccttttttggtggtggggttatctggtttag
| || || ||||| || ||||||||||||||||||||||||||||||||||| ||||||||  | || || || || |||||||| ||  |||||||  ||| |     |  || ||||||||||   |   |   | ||  |  ||  ||||  ||| |   | | | | |  ||   ||||||                                                   
CTGTCCCGGCACTCCTACTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTCGTTGCTGGATTACCGGCTCTAGAACCATATGCACGTTTATTTCACAGgttattctgaactcaatacctttctagttattttgttgttccttcaatgcattggcctgagcaaatttatatatctaaattatctag-------------------------------------------------

upper sequence: Vv18s0157g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 5'ss of exon 7
CAGTTCCTGCACTTCTGCTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGGCTTCCAGCCCTGGAGCCATATGCTCGCCTATTTCATCGgtgaatttccatacctttctctgtgggtaactttttatggaaaacatttcctaatttattctttcttccttttatcttttttccttttatcttttttccttttttggtggtggggttatctggtttag
| || ||||||||||| |||||||| ||||| ||| | || |||||||||||||||||||| |||||||| || || |||||||| ||  | |||||| |||    || |    ||| | || |   | |   ||||| |  |  | |   |   |  || |    |  |  |  ||    ||| |  |||    ||  ||| |   |  |   |||||   ||    
CTGTCCCTGCACTTCTTCTTCCTCCGCCAACGACATCCTTAGATGAGCATCTAGTTGCTGGCCTTCCAGCTCTTGAACCATATGCACGTTTGTTTCATAGgtattgtttctgggcttaccctttcaattagggtttattggtagtagtctgttgctagttttaaggttgtgcttcctcgaatccctagatcagaattgttttctcactt-tcctgttatactgtcag-