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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgcagcactcttacatatgatggttccttgacttttatgcattccctgcag

Basic information

species Vitis vinifera
transcript Vv18s0122g01410.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G02070.1 (Glycine max), 5'ss of exon 8
GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgcagcactcttacatatgatggttccttgacttttatgcattccct-gcag
 ||| | || || |||||||| || |||| |||||||||  ||||  |||| ||||||||||||||||| |||||| ||    || |    |||| |||  |  |   |       |||| || |    | |        | ||| | || |||  || ||||
ATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgttgaacttcctttttttttttctgctggacttttcacttttgc----ggtatccttacgtcttct-tgtattgactagcag

upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G01970.1 (Glycine max), 5'ss of exon 3
GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgcagcactcttacatatgatggttccttgacttttatgcattccctgcag
|||| | || || |||||||| || |||| |||||||||  ||||  |||| ||||||||||||||||| |||||| ||    || |   |||| ||||  | |       ||| | ||| ||   | |  |     |||  ||| |||  | |  | |   
GTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgttg-aacttcttccttttttttc------tgctggacttttcggtgtccttacgtctt--cttgtattgactagcag---

upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G42320.1 (Arabidopsis thaliana), 5'ss of exon 9
GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgca-gcactcttacatatgatggttccttgacttttatgcattccctgcag
|||| |||| ||||| ||||| |||||||| || ||||||||||||| ||  |||||||| |||||||| |||||| |||  |   |      ||   |||| |   |  || || | |  | |   |   ||  |    | ||  ||    ||      |||
GTATTTGGCACATGGTACAGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGgtttgtgtgactgaag----ttacctactctcgacactttcatgaaaacctgtgtcacatattcttataaccgttgc-tatcattgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419420|gb|EC985642.1|EC985642
EST:     CAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAG                         ATTTATGGAGATGGAACAGCGTCTTCGAAGGACTGCTTCAAAATGTTTAAC
genomic: CAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaa ... ttccctgcagATTTATGGAGATGGAACAGCGTCTTCGAAGGACTGCTTCAAAATGTTTAAC