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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTTCAGAATCCTGGGGAAAGTCGTAGACATTTATTTTCAGCTGTTGGGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctggctacaagctttcatcttctacttgttctggtttttggatttcatataaccagcctgcagttccatccacatgttttttacattttgatgcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00680.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349832496|gb|FQ421057.1|FQ421057
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|351012854|gb|FQ430417.1|FQ430417
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAA
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|351028617|gb|FQ446290.1|FQ446290
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|349827467|gb|FQ422335.1|FQ422335
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|351029607|gb|FQ427447.1|FQ427447
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|351030175|gb|FQ432113.1|FQ432113
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|351014409|gb|FQ437411.1|FQ437411
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATT
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATT
EST: gi|349832962|gb|FQ423084.1|FQ423084
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAA-TTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|349826098|gb|FQ415903.1|FQ415903
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
EST: gi|110415179|gb|EC981058.1|EC981058
EST:     GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAG                         TATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG
genomic: GGATGGCAAACAACGGTTGGTACAACAGGCTTTATACTGTGACCGGACAGgtaggcctgg ... tttgatgcagTATTTGGAAGAAGAATCAGAAAAATTCAGTTCTAAAATTGAGAAG