Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtctaattactttgagtgattttcccccatttggtcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 5'ss of exon 9
TGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtctaattactttgagtgattttcccccatttggtcacag
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GTCTGGTTGGAAAATTGTTGCAAGCTTTGAGGGGAAGTTTCCAGATAGGATCAAACAGCTTCCTTTGGACAGGCATTTTGATATTAACAATGTCAAAAGGgtaaattcaaaagccct-tctagaattaattttagagtgggcac-actttgcttatga----tgattactgtta-tctttatattctag----------
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os08g32920.1 (Oryza sativa), 5'ss of exon 9
TGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtc-taattactttgagtgattttcccccatttggtcacag----
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TGGAGGTTGGAAAGTTGTTGCAAGCTTTGAGGGGAAGTTCCCAACCAGGATCAAACAACTCCCTCTGGACAAGCATTTTGATATGAAAAATGTGAAAAGGgta------attcggttattc---ttgaagcttctgttacttgactcatcaattgtatggttataatcaatagatattccttttgcctttttcttttgtgccag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G37100.1 (Glycine max), 5'ss of exon 9
TGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtctaattactttgagtgattttcccccatttggtcacag
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AGCTGGTTGGAAAATTGTTTCCTGTTTTGAGGGGAGATTTCCTGATAGAATGAAGCAATTACCTTTAGATAGGCATTTTGATATCAACAATGTGAAGAGGgtaagttttgaaccactgatccgttgatatctttt------ttttgcctagggtgggggatgctattactcttgcttacccttttt-gtctgttaccag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G00430.1 (Glycine max), 5'ss of exon 9
TGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgta---tctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtctaattactttgagtgattttcccccatttggtcacag
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ATCTGGTTGGAAAATTGTTTCTTGTTTTGAGGGGAGATTTCCTGATAGAATGAAGCAATTACCTTTAGATAGGCATTTTGATATCAACAATGTGAAGAGGgtaagttttgaaccactgtttgttgatatcttttttggttattactcttgcttaccctttgtctcttatcag------------------------------
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 9
TGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtctaattactttgagtgattttcccccatttggtcacag
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AAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGAAATTTCCCCAACCGTATCAAGCAGCTTCCATTGGATAGACATTTTGACCTGAACAATGTTAAAAGGgtg------ggtgtcttcttctgtcctaagtttctgcacga-----gacaagttttgagacttgatttgtcaaaatatctttgatt--ttcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717164|gb|FC065927.1|FC065927EST: TCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGG ATTGTGTTAGAAGCTGATGGTTATCAACCATATCTTATATCTCCTGAGAAA
genomic: TCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctacca ... ttggtcacagATTGTGTTAGAAGCTGATGGTTATCAACCATATCTTATATCTCCTGAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGgtatctaccattgtgttgttcggtctcaattttatactatattttggattatttttgaggtctaattactttgagtgattttcccccatttggtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC