Sequence
atgc intronic sequence ATGC exonic sequenceTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaactgaaatttgctgctatttctattttaaatccttttgctcgctctctctctctctctcttaatctccttttctctttcctatgccatctgaaattc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 9
TGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaactgaaatttgctgctatttctattttaaatccttttgctcgctctctctctctctct--cttaatctccttttctctttcctatgccatctgaaattc
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TGAACTTGCAACACTGCCTGCGCTTGTTCCAGTGTTTACTTCAGCATCAGGTGAAACTCTACTTTTGCTTGTGAAGCATGCAGATCTCATCATTAACAAGgtaatcagtgttacttgtgaaatat-tgatagattatactattcctttgtgttatctatgcggatgaacggagtggtgcccttaatccacaaatgattgtt-
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 9
TGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaactgaaatttgctgctatttctattttaaatccttttgctcgctctctctctctctctcttaatctccttttctctttcctatgccatctgaaattc----
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TGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCCTTAGTTCTGCTGCTGGTGAGACACTATTACTGCTTGTGAAGCATGCTGAGCTTATAATAAACAAGgtagttgagagtttatatcagtttctttattttgatgattgaaaaatctctgtatctagtgactatgtttattcgctacttatttttccatttattattcttag
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 9
TGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaactgaaatttgctgcta---tttctattttaaatccttttgctcgctctctctc-tctctctcttaatctccttttctctttcctatgccat-ctgaaattc
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TGAGCAATCAACACTTCCAGCACTTGTCCCTGTCTTTAGTTCTGCTGCTGGTGAGACACTATTACTGCTTGTGAAGCATGCTGAGTTTATAATAAACAAGgtagttgagagtttatatcagtttctttattttgatgattgaaaatctctgtatctagtgactatgtttattccaacttattttccatttactattctcttag--
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaa--ctga--aatttgctgctatttctattttaaatccttttgctc-gctctctctctctctctcttaatctccttttctctttcctatgccatctgaaattc
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TGAGCTGATAACACTTCCGGCTCTTGTTCCTGTTCTGAGTACTGCTTCAGGAGATACATTACTGCTGCTTGTGAAACATGCAGATCTTATTACTAACAAGgtaaagttgatcaattctatacaatactggcttatgtttttcttaccctgcacttgtttgtttctgcttaagttcttctgattggacatagtatgatgga-----
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaa--ctgaaatttgctgctatttctattttaaatccttttgctcgctctctctctctctctcttaatctccttttctctttcctatgccatctgaaattc
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TGAGTTGACAACGCTCCCAGCCCTTGTTCCTGTCTTAAGTACTGCTACGGGTGATACATTACTGTTGCTTATAAAGCGTGCAGAGCTAATTATTAACAAGgtaaatctctaaccaatatgtatgcataactaaaagtctaaaact-atgtgatgtatgcataactggaactatgtttttgaaccctgcgt-atttagtgtctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782673|gb|CB348188.2|CB348188EST: GTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAG ACTAGTCATGAGCATTTAGTATCACATGTCCTGCCTTTGCTTGTTCGAGCT
genomic: GTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaactgaaa ... attattgtagACTAGTCATGAGCATTTAGTATCACATGTCCTGCCTTTGCTTGTTCGAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGgtaactgaaatttgctgctatttctattttaaatccttttgctcgctctctctctctctctcttaatctccttttctctttcctatgccatctgaaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc