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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGgtaaaccccccttttctccttatcttccttattcaaacttcagtttctctggttcataccatactcttgatcatccttgtgtataccttcatcaagaccattctagagtgaaatttcctttctgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttttgattcattcag

Basic information

species Vitis vinifera
transcript Vv18s0001g07500.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G028914_T02 (Zea mays), 5'ss of exon 9
TGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGgtaaaccccccttttctccttatcttccttattcaaacttcagtttctctggttcataccatactcttgatcatccttgtgtataccttcatcaagaccattctagagtgaaatttcctttctgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttttgattcattcag
| |||||||  | || |||||||||||||||||    |||||||| ||| |||||||||| ||  |||| ||||| ||||| || ||||||||||| ||||||   |      |  | || || |   | |||    ||   ||    ||  |   || |||| | |    ||                                                                                                                   
TTCTGTTTCTCTCTTTATGGAGTTGCTGGGTTTCAATACCCAGAAGTGGATAACTGCTGGAGGGTTTGGGACAGTGTTGCTTACACTTGCTGGTCGAGAGgtactacaaagcatgttgctgatatgattcatttgtgctgtggtg---ctaatatctatcataatttgttgcag------------------------------------------------------------------------------------------------------------------

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G10060.1 (Glycine max), 5'ss of exon 9
TGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGgtaaaccccccttttctccttatcttccttattcaaacttcagtttctctggttcataccat--actcttgatcatccttg--tgtataccttcatcaagaccattctagagtgaaatttcctttctgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttttgattcattcag
||||||||| ||||||||||||||||| ||||| ||||| ||||| ||| |||||||||| ||| | ||||||||||||||||| || || |||||||||||| | |    ||| ||  ||||  |   || |   | |   |||| | |||||  || | |    ||||| ||||  ||   |||  | |    |  | | ||                                                                                        
TGCTGTTTCGTTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGGTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTGGCAGGTCGTGAGgtacagcattatttcct--ttatactggctact---attatggtttgtatggttactagctttgtttcttgttcattgtttgttgtgaatccatcttcaaatcaa---------------------------------------------------------------------------------------

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G10060.2 (Glycine max), 5'ss of exon 9
TGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGgtaaaccccccttttctccttatcttccttattcaaacttcagtttctctggttcataccat--actcttgatcatccttgtgtataccttcatca--agaccattctagagtgaaatttcctttctgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttttgattcattcag
|||||| |||||||||||||||||||| ||||| ||||| ||||| ||| |||||||||| ||| | ||||||||||||||||| || || |||||||||||| | |    ||| || | ||     ||   |   | |   |||| | ||| |  || | |    ||||| ||||  ||   | |   ||||||   | | ||                                                                                        
TGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGGTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTAGCAGGTCGTGAGgtacagcattgtttccttcata-----ctggctactattatggtttgtatggctactagctttgtttcttgttcattgtttgttgtgaattcatcttcaaatcaa---------------------------------------------------------------------------------------

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G10050.1 (Glycine max), 5'ss of exon 9
TGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGgtaaaccccccttttctccttatcttccttattcaaac--ttcagtttctctggttcataccatactcttgatcatccttgtgtataccttcatcaagaccattctagagtgaaatttcctttc-------tgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttt-tgattcattcag
|||||| |||||||||||||||||||||||||| || || ||||| ||| | |||||||| ||| | |||||||||||| |  ||||||| ||||| |||||| |       ||  |   ||   |   |||   ||   || |||     | ||   ||   |  |  ||      | ||| ||| |  |     | |   |  |||||| |   |||    |       |      | | || |||||      |  |||      |  ||    | |||||| ||||  ||||||
TGCTGTGTCATTGTTCATGGAGTTGCTGGGTTTCTCTACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGATTTCCCTTGCAGGTCGCGAGgtacagtataggttctttgatactctgtctatgagaatgattaagtcatctttgtcattagagtttttatggattgtcctgtatattcgatttctcaaattttgttagagtaactcttcaaggcatagccatagccattatcaatcaggtaggctcttgtttgctgtcatcctcacttcatttttgtgatgtattcag

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G10050.1 (Glycine max), 5'ss of exon 6
--------------------------------------------------TGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGCTAACTGCTGGGGGTCTTGGCACAGTATTGCTCACCCTTGCTGGTCGTGAGgtaaaccccccttttctccttatcttccttattcaaacttcagtttctctggttcataccatactcttgatcatccttgtgtataccttcatcaagaccattctagagtgaaatttcctttctgatttctgttaagcaggtgaatcttcatttatcacaaagcttttcttattttttgattcattcag
                                                  |||||| |||||||||||| ||||||||||||||||||| || || | | | |||||||| ||| | |||||||                                                                                                                                                                                                                      
ATGAGAATTGATTTTACTGGGAAAGCTGTATATACTGCAATATGGATTGCTGCTGTGTCATTGTTCATG-AGTTGCTGGGTTTTTCCACACATAAgtagttgactgctggtggtttgggcacag----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------