Sequence
atgc intronic sequence ATGC exonic sequenceCTCTTGACCTAATAGAACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAATgtaagatttttttctctttttttaaaattgttatttttaaaatttaggtttaattttttttacttttttcgcatataatgaatgcttcattcttttggatatatattctgctttcttactgagagtcagcttggttctacttatatcattggcaattttgatttgtgtctcaatgaaatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 8
CTCTTGACCTAATAGAACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAATgtaagat-ttttttctctttttttaaaattgttatttttaaaatttaggtttaattttttttacttttttcgcatataatgaatgcttcattcttttggatatatattctgctttcttactgagagtcagcttggttctacttatatcattggcaattttgatttgtgtctcaatgaaatcag
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CTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAATgtaaagtatttttttttttcttttcataccaatggatattaaatacaatttc--cttgtatcaaatgttgtgccttggatgt-tgtattacatttctgaaaagaggttatgcatgtatgaacag-----------------------------------------------------------
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G37130.2 (Glycine max), 5'ss of exon 9
CTCTTGACCTAATAGAACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAATgtaagatttttttctctttttttaaaattgttatttttaaaatttaggtttaattttttttacttttttcgcatataatgaatgcttcattcttttggatatatattctgctttcttactgagagtcagcttggttctacttatatcattggcaattttgatttgtgtctcaatgaaatcag
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CTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAATgtaaagtatttttttttctttttataccaatggatattaaa---tacaatttccttgtatcaaatgttgtgccttggatgt-tgtattacatttctgaaaagaggttatgcatgtatgaacag-----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383911|gb|EC948316.1|EC948316EST: AACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAAT ATCTTAAAGAGAGAAACGGCCCTAGCAACTGCAGCTGTTTATGATTCAATG
genomic: AACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAATgtaagatttt ... atgaaatcagATCTTAAAGAGAGAAACAGCCCTAGCAACTGCAGCTGTTTATGATTCAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTTGACCTAATAGAACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAATgtaagatttttttctctttttttaaaattgttatttttaaaatttaggtttaattttttttacttttttcgcatataatgaatgcttcattcttttggatatatattctgctttcttactgagagtcagcttggttctacttatatcattggcaattttgatttgtgtctcaatgaaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA