Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttctggtccattgttgttttcctatttttaatataatgagttccattggagacataaacatctaattggcatcttcgtacggtgtatttctttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G01670.1 (Glycine max), 5'ss of exon 9
TTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttctggtccattgttgttttcctatttttaatataatgagttc-cattggagacataaacatctaat-tggcatcttcgtacggtgtatttctttt-
||||||||| |||||||| ||||| |||||||| | |||||||||||||| |||||||||| ||||| ||||| || || |||| | |||| |||||||| || | | | | | || || || ||||| | | ||||| | | | || | | || ||| || || || | | || ||
TTGGGTTCTGGATGCAACCCCTGGAAAAGTTCGAGCAGGTGGAGATGGAGAAGATCATCCAGCAGAACTCATATCCTTTCTAAGTACACTGCCAAATGAGgtagatctttaattgaatcttcttgtc---tttttgagaaaatgaatgcatagtgatgttaatttgatgcaatgtgttgcttttgttttggttccttaactta
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G44190.1 (Glycine max), 5'ss of exon 9
TTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttctggtccattgttgttttcctatttttaatataatgagttccattggagacataaac---atctaat-tggcatcttcgtacggtgtatttctttt
|||| |||| |||||||| ||||| |||||||| | |||||||||||||| ||||||||||| ||||| ||||| || || |||| | |||| || ||||| || | | | | | || | || ||| | | | ||||| | || || || | || || ||| || | || | | || ||
TTGGATTCTGGATGCAACCCCTGGAAAAGTTCGAGCAGGTGGAGATGGAGAAGATCATCCAGAAGAACTCATATCCTTTCTAAGTACACTGCCAAAGGAGgtagatctttaattgaatcttctcgtc---tttctgagaaaatgaatgtaat-ggtgatgttaatttgattcaatgtgttgctcttgttttggttcttcaactt
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT4G10030.1 (Arabidopsis thaliana), 5'ss of exon 9
TTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttctggtccattgttgttttcctatttttaatataatgagttccattggagac-ataaacatctaattggcatcttcgtacggtgtatttctttt--------------------------------------------------------------------------------------
|||||| | ||||| |||||||| ||||||||| | || ||||||||||| ||||||||| || || ||||| || || ||||| |||| || | ||| | | | | ||| ||| | | | ||| | ||||| || |||| | | || | || || | | | ||
TTGGGTATTGGATGCTACTCCTGGTAAAGTTCGTGCAGGAGGAGATGGAGAAGATCATCCACGAGAGCTTATATCATTTCTACGTAAATTGCCAAAAGTGgtaagctaattgaacatgcatgta---caaatattacaagaatgaattttgctggacattacaagaagagtgttattgatttattgcaataagcagtttgaaccacctacatgttcttagaagtcagaagaaccaaaggatctagacagtttaagcttatgaacatcttttctgtttggtttaaaag
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S90_13V6.1 (Physcomitrella patens), 5'ss of exon 9
TTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttctggtccattgttgttttcctatttttaatataatgagt-tccattggagacataaacatctaattggcat-cttcgtacggtgtatttctttt
|||||| ||||||| || ||||| || ||||| ||||||||||||| ||||||||||| | |||||| || | ||| | || ||||| ||| || | | |||| |||| | || | | | ||| || | | | || ||| || | |
GTGGGTTTTAGATGCTACACCTGGCAAGGTTCGATCTGGTGGAGATGGTGAGGATCATCCCGGGGAACTGATTGCAACTCTTCGCAAGATGCCAGCCTCGgtaaaatatccttaatccaacagtttcaagttttcacaatggcagatgtacccccaagattctaatgtaaagaggatatactttgtcaaataagtccaag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30295766|gb|CB972560.1|CB972560EST: AGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAG GTGTTTTCAAAGCGGGATGTTATGAATGCTCTTATTAAAGAAGGATTTTCC
genomic: AGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttct ... tttatggaagGTGTTTTCAAAGCGGGATGTTATGAATGCTCTTATTAAAGAAGGATTTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATGAGgtgaatttctggtccattgttgttttcctatttttaatataatgagttccattggagacataaacatctaattggcatcttcgtacggtgtatttctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaca