1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACAGATTCAAGGCTCAGACCCGATCAAAGGTGCCTTGAAAACGGGGAATATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcataggttatcttgcctccatgttgttaaatgcaaatgttgtcatgtacccccaagtgagtgaagctattttttggagtttagccatatagagc...
species | Vitis vinifera |
transcript | Vv18s0001g03790.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAG TCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATEST: gi|110410950|gb|EC976646.1|EC976646
genomic: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcata ... ggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
EST: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAG TCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATEST: gi|161719223|gb|FC065737.1|FC065737
genomic: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcata ... ggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
EST: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAG TCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
genomic: ATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcata ... ggaaatgcagTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGATTCAAGGCTCAGACCCGATCAAAGGTGCCTTGAAAACGGGGAATATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGgtaaatcataggttatcttgcctccatgttgttaaatgcaaatgttgtcatgtacccccaagtgagtgaagctattttttggagtttagccatatagagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtgaa