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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGAGTTGGAGGAGGCAGTATCATATGGAAGGACTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagcaaaattctgttgtttagcatgatatagttccttgctgcctactgcacaataagaaaaattctgtgatgttggttggttagcaccagcaaactcatgggaagggatacctattcttgtgagatttgcagctggattctcatttactctccctcaccctctctctttctctatag

Basic information

species Vitis vinifera
transcript Vv18s0001g03070.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125453|gb|CB910792.1|CB910792
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
EST: gi|30320437|gb|CD003699.1|CD003699
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
EST: gi|110428231|gb|EC994696.1|EC994696
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
EST: gi|110361320|gb|EC924786.1|EC924786
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
EST: gi|32270615|gb|CD719774.1|CD719774
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
EST: gi|110730262|gb|EE107138.1|EE107138
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
EST: gi|77577816|gb|DV217661.1|DV217661
EST:     CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAG                         GACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA
genomic: CTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagca ... ttctctatagGACTGTGTTGCATTACTGGCATATGAACAACCTCATAAGTCCGTGGTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGAGAGTTGGAGGAGGCAGTATCATATGGAAGGACTAAATTGGCTAAATTCTTTGAGTTACCAGGTTTTGAGGAGCTAGTTCAGgtactaagcaaaattctgttgtttagcatgatatagttccttgctgcctactgcacaataagaaaaattctgtgatgttggttggttagcaccagcaaactcatgggaagggatacctattcttgtgagatttgcagctggattctcatttactctccctcaccctctctctttctctatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT