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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCACCCTTGAAGAAACCCTTGATTCCTTTCAGAAATCCATACACAAAGATATGAGGAACCTTCACATCGAAATTCTGAGACAATTTCATATTCAAGAGgtatttaatatgtggtgtcattctcagatttccatcggttttgctaggttttttccttgtaattcatcttctttagttactgccag

Basic information

species Vitis vinifera
transcript Vv18s0001g02820.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02820.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G41880.1 (Glycine max), 5'ss of exon 9
AAGCACCCTTGAAGAAACCCTTGATTCCTTTCAGAAATCCATACACAAAGATATGAGGAACCTTCACATCGAAATTCTGAGACAATTTCATATTCAAGAGgtatttaatatgtggtgtcattctcag--atttccatcggttttgctaggttttttccttgtaattcatcttctttagttactgccag
| | |||||||||||||| || |||||||||||||||||||||||| | |||||||| |||||||| || |||||| ||||||| |||||||| |||||||| |    ||| |||  | |||    |  |||| |||   |||||  |     || |  | ||||| ||  |||   |  || |    
ACGGACCCTTGAAGAAACTCTGGATTCCTTTCAGAAATCCATACACGAGGATATGAGAAACCTTCATATTGAAATTTTGAGACAGTTTCATATGCAAGAGgtgt---gtatctggaattattgatggtgattttcat---ttttgtaa-----ttcctctctaattaattgtctcatgcaacag----

upper sequence: Vv18s0001g02820.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA14G07090.1 (Glycine max), 5'ss of exon 12
AAGCACCCTTGAAGAAACCCTTGATTCCTTTCAGAAATCCATACACAAAGATATGAGGAACCTTCACATCGAAATTCTGAGACAATTTCATATTCAAGAGgtatttaatatgtggtgtcattctcagatttccatcggttttgctaggttttttccttgtaattcatcttctttagttactgccag
| | ||||| |||||||| || |||||||||||||||||||||||| |||||||||| |||||||| || |||||| ||||||| |||||||| |||||||| |    ||| |||  | |||    |||    ||     || ||   |   |  ||  | | |  |||  |  |           
ACGGACCCTGGAAGAAACTCTGGATTCCTTTCAGAAATCCATACACGAAGATATGAGAAACCTTCATATTGAAATTTTGAGACAGTTTCATATGCAAGAGgtgt---gtatctggaattatt----gatggtgattttcatttcttaatcactctctaattaattgtctcatgcaacag-------