Sequence
atgc intronic sequence ATGC exonic sequenceGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggatgaaaatattttacttgcatgtgctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g06880.1 (Oryza sativa), 5'ss of exon 3
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggatgaaaatattttacttgcatgtgctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca-
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ATATGGTCTTACTGAAACATGTGCTGGCGGGACATTTTCCGAGTATGATGACAATTCTGTTGGCCGTGTTGGTGCTCCATTGCCTTGCTCATACATTAAGgtacattaaaaaatatgttttattattttggtagggtgtattgtatcctc-atttccatagtaaagttattgttgccatgcatgttatcactgtgatataa
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g07110.1 (Oryza sativa), 5'ss of exon 8
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggatgaaaatattttacttgcatgtgctttaatgcgagatc--ttggacctacatgtgcac--ttcctagctgaaaaccctgaccttggtagaaaaca---
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GTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttt-------tgtttttcttacccatattctaatttcagatgaattcgtttttggtagaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaa
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G118286_T01 (Zea mays), 5'ss of exon 8
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaag-tggatg---aaaatattttac-ttgcatgtgctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca
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TTATGGTCTGACTGAAACTTGTGCTGGAGGGACATTTTCAGAGTATGATGACACATCTGTCGGTCGTGTTGGTGCTCCACTACCTTGTTCGTATATTAAGgtcagcttcatttcttaactattttgtatcaaagctgtttttat-cacgatgttatctgtgcggatctattttgtattttttatgcctaacaatgtttgta----
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G117064_T01 (Zea mays), 5'ss of exon 6
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggatgaaaatattttacttgcatgtgctttaatgcgagatcttggacctacatgtgcact-tcctagctgaaaaccctgaccttggtagaaaaca-
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ATATGGCTTGACTGAAACCTGTGCTGGTGGGACATTTTCAGAGTATGATGAAACATCTGTTGGTCGCGTTGGTCCCCCTTTGCCTTGTTCATACATTAAGgtata-gaaccaaagttttttatatttacttcacctgacat-agttctcccatagaaacaagcattattttcattcataatagtacagttcatgacatatct
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA14G23710.1 (Glycine max), 5'ss of exon 7
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaa--gtggatgaaaata-ttttacttgcatgtgctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca--
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ATATGGTCTCACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTTGGCCGTGTTGGACCACCTCTTCCGTGCTCATTTATTAAGgtaattatagatctgatcaattttaccttcatacaacttga-atga----ctcgttttttatgttggcttggggggagggaagttatgtggtagcatggtagttt
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaa--gtggatgaaaata-ttttacttgcatgtg-ctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctg--accttggtagaaaaca
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ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaattatagatctgatcaattttatcttcatacaacttgaatgacacatttt----ttatgatggcttggggggagggagtaatatggtagcatggtagtttg--
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 7
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGg---taagtggatgaaaatattttacttgcatgtgctttaatgc--gagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca
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ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaattgattagatgtaatccacctccatacattttaacctcaaggaatatttactaacataaatgctcctttttt-----ccctcag--------------
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaa---gtggatgaaaatattttacttgcatgtgctttaatgcgagatcttggacctacatgt----gcacttcctagctgaaaaccctgaccttggtagaaaaca
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ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccactttta-atactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716236|gb|FC065864.1|FC065864EST: ATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAG TTGATAAATTGGCCTGAGGGTGGGTATTTAACAAGTGATAAACCAATGCCT
genomic: ATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggat ... tctgtttcagTTGATAAATTGGCCTGAGGGTGGGTATTTAACAAGTGATAAACCAATGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggatgaaaatattttacttgcatgtgctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaa