Sequence
atgc intronic sequence ATGC exonic sequenceGTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtccatgaaagttgaactttatggttaatttcttattcgatattactgctgctcacttttgcatattattgtggtggcaaacaaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os06g49110.2 (Oryza sativa), 5'ss of exon 9
GTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtccatgaaagttgaactttatggtta-atttcttattcgatattactgctgctcacttttgcatattattgtggtggcaaacaaaag
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GTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGACgtatggaacttgca----ctgaatctactatttccatctagcatactgtttagttgcttaatatctaaattcatcattttcatttcattctgaag
upper sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S450_21V6.2 (Physcomitrella patens), 5'ss of exon 9
GTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtccatgaaagttgaactttatggttaatttcttattcgatattactgct------gctcacttttgcatattattgtggtggcaaacaaaag-----------------------
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ATATGCAAGTGCCTTTTACGGGCCCTTCAGAGAAGCACTGGACTCCAATCCCCGTTTTGGTGACAAGAAGACgtaagttccaagtacaatctcttgtccggtattatgtcagtactagccaggattcaccaaaaggaatataattgca-attcatggggttttttacgaggtccttacctatgtggtgttatcag
upper sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ25898 (Selaginella moellendorffii), 5'ss of exon 9
GTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtccatgaaagttg--aactttatggttaatttcttattcgatattactgctgctcacttttgcatattattgtggtggcaaacaaaag
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GTATGCAAGCGCGTTCTATGGTCCATTCAGAGAAGCTTTGGACTCAAATCCCCGTTTTGGAGATAAGAAAACgtaagcagttcctctttttctccaactcttttgctcactctctggagaatgaaaac-cag------------------------------------
upper sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ10919 (Selaginella moellendorffii), 5'ss of exon 9
GTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtccatga--aagttgaactttatggttaatttcttattcgatattactgctgctcacttttgcatattattgtggtggcaaacaaaag
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GTATGCAAGCGCGTTCTATGGTCCATTCAGAGAAGCTCTGGACTCAAATCCCCGTTTTGGAGATAAGAAAACgtaagcagttcctctttatctccaactcttttgctcactctctggagaatgaaaac-cag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373793|gb|EC938150.1|EC938150EST: CCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAA-C TTATCAGATGAACCCAGCGAATTACAGAGAGGCTC
genomic: CCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtc ... caaacaaaagTTATCAGATGAACCCAGCGAATTACAGAGAGGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACgtatgcagtccatgaaagttgaactttatggttaatttcttattcgatattactgctgctcacttttgcatattattgtggtggcaaacaaaag
- - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA