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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G29810.1 (Glycine max), 5'ss of exon 9
TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttc-----cattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag
||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||  | ||||||||      || | ||       || ||||||||  | |  |||    ||  |  || ||        |||     ||  |||  ||   ||        |                         
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGAgtaagtcatgttttctctcaatgc----tctaatcaaat--tccggtttgcatatgctgtcaattcctaaaaacatgacattttttttaattttcaaaaaaaacat-------------------------

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 9
TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacatag-gatcaaatcaaatatttccat---ttttccatttttccat-ttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag
||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||  |||| |||||||||||||||||||| ||  | || |||||      || | ||  |    |||||||      ||| |||   || || |||  |  |    |  ||||||  ||  ||| ||  ||| |                                 
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa-------------------------------

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G06190.1 (Glycine max), 5'ss of exon 9
TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttcca------ttttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag
||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||| | ||||| || ||  | ||||| | |    | |   |||    ||| | ||     ||||   ||||      || ||| |||| ||      || |   |  |    ||||| ||   |                             
TGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAgtaagacggtcttcttccaaactc--gattatattg--cattttatttttgtaggattcccagttttacaaataatttctaccttgtccatttgcatatatag-----------------------------

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G33520.1 (Glycine max), 5'ss of exon 9
TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag
||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||||| ||||| || ||  | ||||| | |    ||| |         || || || |    || ||||||   ||||||  |   |||    | ||||       || |||||     ||| |  ||  |    |  |||    ||
TGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGAgtaagacggtcttcctctccttccta-attaactcga----ttgcatttt---atttttttagaattc----tcggtt-------ttacaaataa---tttctaccttgtccatttgcatatatag