Sequence
atgc intronic sequence ATGC exonic sequenceTAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g37990.1 (Oryza sativa), 5'ss of exon 2
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa
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-----------------------GTGGTAGAGGtaaac-gtcaaagttgaaagtgcaggcc-caaataat-gtgcataataatgcattttacgctgaagaaaaaaa-atttgaaatctgaa-ctacag------------------------------------------------------------------------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 10
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagt-catccttgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggc-ttgtaaatgcttgcaa-
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TAATGTGCACAACAACGCTTTCTATGCCGAGGAAAAACTACTGAAATCTGAGCTGCAAGCAATGCGAGATTGTGACCCTTCATCTGCACGGCATTGGATCgtaagagcatcatctttcagtatc-atcccttttatattgtgccggtgtt--gatgtaccatgataacgtttccagtacctggtcattgttttctttcttcag
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 9
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatcct------tgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa
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TAATATGCATAATAATGCATTTTACGCGGAAGAAAAACTTTTGAAATCTGAACTCCAGGCCATGCGTGATTGTCACCCTTCATCTGCACGTTATTGGATTgtaagaatttgtgagagaagcactgtatcgttcttttataat-tcactagctactgtgcattgtaattagtggatttcccgtg--caattttgtgtggagcta---
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 9
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggcttg---taaatgcttgcaa
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TAATGTGCATAATAATGCTTTCTATGCTGAAGAGAAGTTGCTCAAATCTGAGTTGCAAGCAATGCGTGATTGCGACCCTTCATCTGCCCGCCACTGGATTgtaagagctgtttttcttgttttaaccttttgttattcctaccagtactgttgtaccattacattatgcatttaatacctgttcattatctttatgctta---
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G09290.1 (Glycine max), 5'ss of exon 9
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccct----------gcttctataatttataa-aatggatctatattttg---ttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa--------------------------------------------------------------------------------
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TAATGTTCACAATAATGCATTTTATGCTGAAGAGACTCTGCTCAAATCTGAATTGGAAGCCATGCGTGATTGCAATCCTTTGGCTGCTCGACATTGGATTgtaaggcttgcccactttctagagccgaattcttactatccatgttaataatttcatactttgaaactgaattcatatttgctatggtg-aaatagttgattatttccttacaatacaccgacaattatatctcaacatatttttttatttaattaattaaatgacaatggttaccatttcattgatgcttcag
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 9
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccctgcttctataatttataa--aatggatctat--attttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa
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GAATGTTCACAATAATGCATTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTTgtaagtcttttgtgggttttaccgccaacttcaaactattggagttggtaattttgaattttgtcaaactgtcgaatacttatttgcattgcaa-tgatca---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384772|gb|EC949232.1|EC949232EST: AAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATT GTTAGGAACACAAGAACTGTCAACAGGACTGGACAGCTAACAGGCTACAAG
genomic: AAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatc ... catattccagGTTAGGAACACAAGAACTGTCAACAGGACTGGACAGCTAACAGGCTACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccctgcttctataatttataaaatggatctatattttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga