Sequence
atgc intronic sequence ATGC exonic sequenceAGAAGCTCGACCTGCTAGTCGGCCTACATGCAGAGAAGAAGATCAAAGGCTTCGCCATCTGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAGgtatattcaatgaccctttagctgaaaaatgagatttaagcagttgcttctggttttcattttctccatgttctctgtatatctgttatgatgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g02700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G73680.1 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGCTCGACCTGCTAGTCGGCCTACATGCAGAGAAGAAGATCAAAGGCTTCGCCATCTGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAGgtatattcaatgaccctttagctgaaaaatgagatttaagcagttgcttct-ggttttcattttctccatgttctctg-tatatctgttatgatgttcag
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AGAAGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgt---ttctaag---ctctaaatcaaattttgactacacttactaaaacaaaggcttttctaaactctaacttacttgctaaatttggttag--------
upper sequence: Vv17s0000g02700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ37878 (Selaginella moellendorffii), 5'ss of exon 10
AGAAGCTCGACCTGCTAGTCGGCCTACATGCAGAGAAGAAGATCAAAGGCTTCGCCATCTGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAGgtatattcaatgaccctttagctgaaaaatgagatttaagcagttgcttctggttttcattttctccatgttctctgtatatctgttatgatgttcag
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AGAAGCTCGACTTGCTCGTCGGCTTGCTGGCGGAGAAGAAGATCAAAGGCTTCGCCATTAGCGAGACGTCGTTTTTCATCTTTCTCCTCATGGCCACCAGgta-----aaaactgctagaaccaagtcac-agttttaacacattgcattgctttcccacag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30330513|gb|CD013775.1|CD013775EST: TTCGCCATCAGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAG GAGGTTGGAAGCAGACCGGTTTTTCACTACCAACTTCAACTCTCAAACCTA
genomic: TTCGCCATCTGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAGgtatattcaa ... tgatgttcagGAGGTTGGAAGCAGACCGGTTTTTCACTACCAACTTCAACTCTCAAACCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAGCTCGACCTGCTAGTCGGCCTACATGCAGAGAAGAAGATCAAAGGCTTCGCCATCTGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAGgtatattcaatgaccctttagctgaaaaatgagatttaagcagttgcttctggttttcattttctccatgttctctgtatatctgttatgatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC