Sequence
atgc intronic sequence ATGC exonic sequenceGGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTgtaagatatagtacccgaattagctattattggattagtatgtgctcatattttctaacatgttgcatgcactgagatctagagtcttatttcttgttat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 9
GGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTgtaagatatagtacccgaattagct--attattggattagtatgtgctcatattttctaacatgttgca-------------tgcactgagatc--tagagtcttatttcttgttat--------------------
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GGTCGGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCACTTTTGGGTgtaagataaagtttccttgttgctctgatatttagattagtcaatgcacaccttttttgttgatgtgcaattgaagcattttttcactggcaacactggtgttgaatcttcttttattgtgtgtttatactttatag
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 7
GGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTgtaagatat-agtacccgaattagcta--ttattggattagtatgtgctcata--ttttctaacatgttgcatgcactgagatctagagtcttatttcttgttat
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GGTCTGAAATATATCAGGAGATGTTGGTAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTgtaagataagacttcctttatggactgagttcttgaagtattttttgcagaaaactctgacaagaatctttatttgctgtgttatgatag---------------
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G03270.2 (Glycine max), 5'ss of exon 4
GGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTgtaagatat-agtacccgaattagcta--ttattggattagtatgtgctcata--ttttctaacatgttgcatgcactgagatctagagtcttatttcttgttat
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GGTCTGAAATATATCAGGAGATGTTGGTAAAAGCACTTGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTgtaagataagacttcctttatggactgatttcttgaagtattttttgcttaaaactctgacaagaatcttcatttgctgtgttatgatag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184403|gb|CF603757.1|CF603757EST: ATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGT GGTTTATCTTCAAAGGAAGCAGAGCTGCTAAAAGATGGATCTAATGCAGAA
genomic: ATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTgtaagatata ... tatcccgcagGGTTTATCTTCAAAGGAAGCAGAGCTGCTAAAAGATGGATCTAATGCAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTgtaagatatagtacccgaattagctattattggattagtatgtgctcatattttctaacatgttgcatgcactgagatctagagtcttatttcttgttat
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT