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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatattaagagctaaacttatacctatattttttgatttctcatcttggtttatttatgtttggatggctggatgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g01200.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 9
ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatatta-agagctaaactt--atacctatattttttgatttctcatcttggtttatttatgtttggatggctggatgcag
|||||||||||||||||||  | |||||||||||||||||||||||| || || || |||||||||||||||||||| || ||||||||  |||||||||||||  |  | |||||   | ||  ||  ||  | | ||||||   |  || | |  |||      ||||  |||||| ||| || |  |||
ACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGgtaatgtaatgtatatgggatagggaagattgaagagctatatgcatcaatattttttctg-----atttgggtttgg-tggttgaaaacag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G38140.1 (Glycine max), 5'ss of exon 8
ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatattaagagctaaacttatacctatattttttgatttctcatcttggtttatttatgtttggatggctggatgcag
||||||||||||||||||| ||||||||||||||| || || ||||| || || || |||||||| || |||||||| || ||||||||  || |||||||||| ||   |  ||| | ||| |      |               | ||||  | || ||   ||    ||||  ||| || |  |||
ACTCCAAATCCAGAATGTGGAACAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGACGGAAAATTTTTGCATCTTCCTGTGGTTAATAGAGgtaatatagatagtat-atgagatggggaaa--------------aagttcttgtattagtaatttctgatttgagtggttgaaaacag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G17720.1 (Glycine max), 5'ss of exon 7
ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatat--taagagctaaacttat-acctatattttttgatttctcatcttggtttatttatgtttggatggctggatgcag
||||| ||| ||| ||| | |  |||||||||||||||||||||||| || || || ||||||||||| |||||||| || |||||||   ||||||||||||| ||  | |||||   | |||  | | | |  | ||||||   |  || | |  ||| | |||      | || | ||| || |  |||
ACTCCCAATTCAGTATGCGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGCGGTTGATAGAGgtaatataatatatatgggatgaggaagattgaagagctatatgcatcaatattttttct-gatttg-----ggttaggtggttgaaaacag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 7
ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatattaagagctaaacttatacctatattttttgatttctcatcttggtttatttatgtttggatggctggatgcag
||||||||||||||||||| ||||||||||||||| ||  | ||||| || || || |||||||| || || ||||| || |||| |||  || |||||||||| ||     | ||  | || || ||        ||        | ||||    |       ||    ||||| ||| || |  |||
ACTCCAAATCCAGAATGTGGAACAATTGATACACCAATAATCGATGCACTTCACACTATGCATGACGGAAATTTTTTGCATCTTCTTGTGGTTAATAGAGgtaatat-----agatagatag-tatacggg-----atggggaacaagttcttgcataaacaatttctgatttgggtggttgaaaacag

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S11_325V6.1 (Physcomitrella patens), 5'ss of exon 8
ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatattaagagctaaacttatacctatatttttt-gatttctcatcttggtttatttatgtttggatggctggatgcag------------------------------------------------------------------------------------------------------------
|| || ||||| || |||||     | || ||| |  | || |||||||||||| | ||||||||| |||||||| | || ||||||||||  ||||| |||||  |||    || |      |     | |  | || || ||  || |   ||  |||  |   | |  |  |||| | |  ||                                                                                                                
ACGCCTAATCCTGAGTGTGCTGGTTTGGACACAACTCTGGTGGATGCCCTACATGCAATGCATGATAGGAAATTTCTCCATCTTCCTGTCACAGATAGCGgtaa-gtgcgac-tactttcgtttgtttgtgttgcaatgttgttgagagtgtacaagttg--taggtaagatcgggatagatttatctgacgtcacaattagctcccttttaaaagcaattcatgaacacctggttttttcaaagtgattttcataacctacatactaaatgtttagtgcctggggaatcctgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363858|gb|EC927482.1|EC927482
EST:     ACATACCATGCATGATGGGAAATTTTTACACTTTCCTGTCATTGATAGAG                         ATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
genomic: ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgct ... ctggatgcagATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
EST: gi|71885134|gb|DT034189.1|DT034189
EST:     ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAG                         ATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
genomic: ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgct ... ctggatgcagATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
EST: gi|71858444|gb|DT007499.1|DT007499
EST:     ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAG                         ATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
genomic: ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgct ... ctggatgcagATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
EST: gi|71889831|gb|DT038886.1|DT038886
EST:     ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAG                         ATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG
genomic: ACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgct ... ctggatgcagATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTG