Sequence
atgc intronic sequence ATGC exonic sequenceACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTgtaagtacttgctcctgttattatggatggttcattcttgtggcttaaaacagaggcatacacacagcttgtttctgtatttacattcatgtggatcatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G061684_T01 (Zea mays), 5'ss of exon 8
ACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTgtaagtacttgctcctgttattatggatggttcattcttgtggcttaaaacagaggcatacacacagcttgtttctgtatttacattcatgtggatcatt------
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TAAACACCTTGGCATCACCCATATATTGTGCTTGTGTGCAAATGAAATTGGACAGTCAGAATCGCAGAAGCCTGACCTTTTTGAGTATAGGAATTTCTCGgtgagttctacataatacctccatggatggaaaatcatttgcctttagcataaggcagaagactcagtttagatatctttcagtgttgaattgcttctctatgtag
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G01160.1 (Glycine max), 5'ss of exon 10
ACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTgtaagtacttgctcctgttattatggatggttcattcttgtggcttaaaacagaggcatacacacagcttgtttctgtatttacattcatgtggatcatt
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GCAATACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTACAAGAATTTCTCTgtaagtcatatatacttgtattttctaccctcacttattttatgtcttatttgctgagtttattttatttgaggatcagttgagcttctccttgatgcct
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G38500.1 (Glycine max), 5'ss of exon 7
ACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTgtaagtacttgctcctgttattatggatggttcattcttgtggcttaaaacagaggcatacacacagcttgtttctgtatttacattcatgtggatcatt
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GCAATACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTACAAGAATTTCTCTgtaagtcatatttacttgtattttctaccctcacttattttgtgtcttatttgctgagtttattttatttgagaatcagttgagcttttccttgatgcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30135677|gb|CB921015.1|CB921015EST: GACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCT ATTTCTGACAGTGAAGACACAAACATCAGCAGCATATTTGAAGAAGCTTCT
genomic: GACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTgtaagtactt ... atttggacagATTTCTGACAGTGAAGACACAAACATCAGCAGCATATTTGAAGAAGCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTgtaagtacttgctcctgttattatggatggttcattcttgtggcttaaaacagaggcatacacacagcttgtttctgtatttacattcatgtggatcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacag