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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCTCTACCTCTGCGGAATGCATGATCCAGAAGCCAAGCCAGTCCTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgtgcccagaatcaattccctttttttttttaaagctagtgaaatttaagtctaaataaaagtgctctttcttgtgttgggtttag

Basic information

species Vitis vinifera
transcript Vv16s0100g00320.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22009453|gb|BQ794487.1|BQ794487
EST:     CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATC                         ATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
genomic: CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgt ... ttgggtttagATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
EST: gi|30322438|gb|CD005700.1|CD005700
EST:     CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATC                         ATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
genomic: CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgt ... ttgggtttagATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
EST: gi|22009470|gb|BQ794504.1|BQ794504
EST:     CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATC                         ATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
genomic: CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgt ... ttgggtttagATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
EST: gi|22009471|gb|BQ794505.1|BQ794505
EST:     CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATC                         ATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
genomic: CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgt ... ttgggtttagATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
EST: gi|34545194|gb|CF513426.1|CF513426
EST:     CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATC                         ATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
genomic: CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgt ... ttgggtttagATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
EST: gi|34546189|gb|CF514421.1|CF514421
EST:     CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATC                         ATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA
genomic: CTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCgtgagtttgt ... ttgggtttagATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCA