Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTGTTTAGAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAgtaaagcagacttcctcttattgtggttcaactgagcttttcatttattttattttagcggttgtttccatggatatttgagatattctctaatatggctattgttgctattcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 10
GCTGTGTTTAGAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAgtaaagcagacttcctcttatt--gtggttcaac----tgagcttttcatttattttattttagcggttgtttccatggatatttgagatattctctaatatggctat-tgttgctattcag
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GCAGTTTTCAAAGAAGACATGCTTCGCAGAGACATTGAGGATCTTCAAAAACGTTACCAGgtct-gcactctgcgtgtcattcaattgttttactttctgagaatgttataaataa-gttttagcaactttatttgtg--tttttgatagtttttataatttgggtggatttccctag----
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA13G43330.1 (Glycine max), 5'ss of exon 12
GCTGTGTTTAGAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAgtaaagcagacttcctcttatt--gtggttcaact----gagcttttcatttattttattttagcgg--ttgtttccatggatatttgagatattctctaatatggctattgttgctattcag----------------------------------------------------
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GCAGTCTTCAAAGAAGACATGCTTCGCAGAGACATTGAGGATCTTCAAAAACGTTACCAGgtct-gctctctgcttgtcattcaattgttttactttctgagaatgttataaataa-gttttagcaactttatttgtgttataaattgttttactttctgagaatgttataaataagttttaggaactttatttgtgtttttggtagtttttataatttggatggatttctctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717204|gb|FC068490.1|FC068490EST: GAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAA GCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACT
genomic: GAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAgtaaagcaga ... tgctattcagGCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTGTTTAGAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAgtaaagcagacttcctcttattgtggttcaactgagcttttcatttattttattttagcggttgtttccatggatatttgagatattctctaatatggctattgttgctattcag
- - - - - GAGAGG
- - - - - AGAGGA
- - - - - - - - - - - - - - - - - - GAGGAT