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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTTGGGATTATTCCTCAAGATCCTACTCTTTTCAATGGCGCCGTGAGATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatctactctttttctaaattttttttctgggtagttgctgataataccatgaagagctgtggaataacaagaaatacccgtgttgaagtttctaactgataatctaccttatacattttgacag

Basic information

species Vitis vinifera
transcript Vv16s0050g02480.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02480.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g37580.1 (Oryza sativa), 5'ss of exon 9
ACATTTTGGGATTATTCCTCAAGATCCTACTCTTTTCAATGGCGCCGTGAGATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatctactctt--tttctaaattttttttctgggtagttgctgataataccatgaagagctgtggaataacaagaaatacccgtgttgaagtttctaactgataatctaccttatacattttgacag
 |   ||||  ||||||||||||||||||  |||||||||||  || | |||||||||||||||||       ||   | | ||| |  |||| ||||| |||     || |    |  ||  ||||||||  | ||       |  | || ||   |  |  |    |  |||   || ||  || | |   ||| |   |                               
TCGAATTGGTCTTATTCCTCAAGATCCTATACTTTTCAATGGTTCCATAAGATACAATTTGGATCCTCATGGGCATTTCTCGGACAAACAAATCTGGGAAgtaggtactccatatgtggttattaaattttgatccttttgttcttttaatgatgt-acaataaataata-aattttaaaaataacacataaagaa-tacatg------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32270844|gb|CD720003.1|CD720003
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAG
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAG
EST: gi|110699494|gb|EE076542.1|EE076542
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|110713613|gb|EE089685.1|EE089685
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAAGCTGTCCAGGAAAAAGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|32268391|gb|CD717550.1|CD717550
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGNGAG                         GTTCTTGNAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAG
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAG
EST: gi|30323099|gb|CD006361.1|CD006361
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCA
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCA
EST: gi|34362924|gb|CF404509.1|CF404509
EST:     GATACAATTTGGATCCCTTGTCCCAACACCCTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|30300431|gb|CB977225.1|CB977225
EST:     GATACAATTTGGATCCCTTGTCCCAACCCCCTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|110695979|gb|EE074612.1|EE074612
EST:     TGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: TGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|32249769|gb|CD715588.1|CD715588
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|34542733|gb|CF510965.1|CF510965
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|34549752|gb|CF517984.1|CF517984
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCGGGAGGCTGTCCAGGAAAAGTTAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
EST: gi|34542820|gb|CF511052.1|CF511052
EST:     GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAG                         GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT
genomic: GATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGgtaatatatc ... attttgacagGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGT