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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGAAGCAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGgtcatttaacatatcctttatatttattttaatgctgcattggccttgtttttgtaatgtaattttttaaaaaaaaaagtttaaatttgtactccattttaactgctaacaatgaatacttaccataagcttcctttctctgtag

Basic information

species Vitis vinifera
transcript Vv16s0050g02180.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361781|gb|EC925279.1|EC925279
EST:     CAACCTTGGTTGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAG                         AACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
genomic: CAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGgtcatttaac ... ttctctgtagAACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
EST: gi|30134905|gb|CB920243.1|CB920243
EST:     CAACCTTGGTTGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAG                         AACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
genomic: CAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGgtcatttaac ... ttctctgtagAACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
EST: gi|110698146|gb|EE075377.1|EE075377
EST:     CAACCTTGGTTGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAG                         AACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
genomic: CAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGgtcatttaac ... ttctctgtagAACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
EST: gi|30321651|gb|CD004913.1|CD004913
EST:     CAACCTTGGTTGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAG                         AACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT
genomic: CAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGgtcatttaac ... ttctctgtagAACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACT