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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgcttgcatgcttgtgtcttttagcttcttattgtagacaaagttctatataactacaattgtggccctggtacag

Basic information

species Vitis vinifera
transcript Vv16s0050g01830.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 8
ACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgc-ttgcatgcttgtgtcttttagcttcttattgtagacaaagttctatataactacaattgtggccctggtacag
|  | || || ||||||||  | |||||  | || ||||| |||||| |||||||| ||||||| ||||||||||| ||  | ||  ||||  | |||||||    | |      | |    || |  ||||||   | |||  |      |    ||| |      |||                  
AGTATATCGAGGAGATTGTGGTGTCTGCGGTTTCATATCACTTGATGAATAACAAAGATCCAGATTACCGAAATGGGAAATTAGTTCTATCCACAAAGAGgttagcagatcaatatagttctctgggatcttttcattccttcctcggtttatgactctttcatggcacag-----------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 8
ACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgcttgcatgcttgtgtcttttagcttcttattgta-gacaaagttctata-taactacaattgtggccctggtacag
|  | || ||||| |||||| |||||||| ||||||| ||||||||| ||| |||  |||| |||||||||||||||||||| || |||||  |||| ||||| |||   |||     |||  | |||     |||   |  ||  | |||||  || |||| | |||   ||  |||   ||  ||||
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatatc-ttgtcca-atgactatgta----agcaattgtttacatgacaagattttatagttactg--atcttggatgtga-acag

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 8
ACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgcttgcatgcttgtgtcttttagcttcttattgtagacaaagttctatataactacaattgtggccctggtacag
|  | || ||||| |||||| |||||||| ||||||| ||||||||| ||| |||  |||| || ||||||||||||||||| || |||||  |||| ||||| ||||  ||||    |||  | |||     |  |  |||  ||   || | ||     | |||   ||  |||   ||  ||||
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatac--ttgccca-atgactatgtaagc-aattaattac-gtgaccagattttctagttactg--atcttggatgtga-acag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404777|gb|CF210404.1|CF210404
EST:     AACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAG                         TTTGTCCCATGGATTGAGTATATTCAAGGAAGACACACGAAAGACAAATGC
genomic: AACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaa ... cctggtacagTTTGTCCCATGGATTGAGTATATTCAAGGAAGACACACGAAAGACAAATGC