1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGGTTTTATAGACATCGATAGCATAAACCCTGATGCATGGCCTGCCCTTGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGgtgagtcatattcccatcactgcttgttataaagtttaatgttgacactgatatctatgtgtctgtccactttcatgattag
species | Vitis vinifera |
transcript | Vv16s0050g00600.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGEST: gi|71862155|gb|DT011210.1|DT011210
genomic: ATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG
EST: TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCA-TTG GTTACACAAGACTGTTTCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTGEST: gi|110700815|gb|EE077801.1|EE077801
genomic: TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGgtgagtcata ... tcatgattagGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTG
EST: TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTG GTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTGEST: gi|30305280|gb|CB982074.1|CB982074
genomic: TGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGgtgagtcata ... tcatgattagGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTG
EST: CTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG
genomic: CTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGTTTTATAGACATCGATAGCATAAACCCTGATGCATGGCCTGCCCTTGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGgtgagtcatattcccatcactgcttgttataaagtttaatgttgacactgatatctatgtgtctgtccactttcatgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA