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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAGGAAGCTCAGAGAGCAATCAATGCTGCACATGTGGAAGTTGAAAGTGTAGAAAATGGAGTTGGAATTGTAAAACTTATGGGCCGATATAGCGgttagagagttagcattatatactgaaggacatatctatagttataggatcttcaatatcttcttttcttattctgtgtttaatgtttgttaacatttcctgcag

Basic information

species Vitis vinifera
transcript Vv16s0013g01140.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 9
GCTGTTGAGGAAGCTCAGAGAGCAATCAATGCTGCACATGTGGAAGTTGAAAGTGTAGAAAATGGAGTTGGAATTGTAAAACTTATGGGCCGATATAGCGgt------tagagagttagcattatatactgaaggacatatct-----atagttata------ggatcttcaatatcttcttttcttattctgtgtttaatgt-ttgttaacatttcctgcag-------------------------------------------------
||||| || ||||| |||||||| || || |||||||||||||| ||||||||||| |||||||||||||||||||| || || |||||| |||| || |||      |||    ||  | || | || || |   |  || |     ||| || ||      | |    ||| |  |       || | || ||  | |  | ||| ||  |  || |  ||                                                 
GCTGTGGAAGAAGCCCAGAGAGCCATTAACGCTGCACATGTGGAGGTTGAAAGTGTTGAAAATGGAGTTGGAATTGTCAAGCTGATGGGCAGATACAGTGgtaaacagtagtttcttctctttttgtattgcaattctaattttctaaataattttattcaatgaaatgacaaaaaatgggagctttttcctatgaatgaaatattggtattagatctttaagcatcatatttctcttttcagagatatactttacaagcttccatatgcag

upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G61580.2 (Arabidopsis thaliana), 5'ss of exon 8
GCTGTTGAGGAAGCTCAGAGAGCAATCAATGCTGCACATGTGGAAGTTGAAAGTGTAGAAAATGGAGTTGGAATTGTAAAACTTATGGGCCGATATAGCGgttagagagttagcattatatactgaaggacatatctatagttataggatcttcaatatcttcttttcttattctgtgtttaatgtttgttaacatttcctgcag
|| ||||||||||| ||  |||| || |||||||||||||| || || || || || |||||||||||||| || || ||||| |||||| |||| || ||| | | | |  |    ||||  |||   || |   | |    ||| ||  || | |   |    | |  ||||||                             
GCGGTTGAGGAAGCACAACGAGCTATTAATGCTGCACATGTAGAGGTCGAGAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgt-aaatattctgtgacatatgttgatt-actttcttttgtgaatacgaagttaact---tgtggtacaaattctgcag--------------------------

upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S282_45V6.1 (Physcomitrella patens), 5'ss of exon 9
GCTGTTGAGGAAGCTCAGAGAGCAATCAATGCTGCACATGTGGAAGTTGAAAGTGTAGAAAATGGAGTTGGAATTGTAAAACTTATGGGCCGATATAGCGgttagagag--ttagcattatatactgaaggacatatc-tatagttataggatcttcaatatcttcttttcttattctgtgtttaatgtttgttaacatttcctgcag-----------------------
|||||||| ||||| ||| | |||||||||||||| |||||||||| ||| ||| |  | |||||  ||||  | || || || ||||| || |||||||||  ||     |||    | |  |   |    || ||| | ||   || |     | ||| |     ||||| | | | |   | |  |    |   |   | |  |                        
GCTGTTGAAGAAGCACAGCGCGCAATCAATGCTGCCCATGTGGAAGCTGAGAGTATTCACAATGGCATTGGGGTGGTCAAGCTCATGGGACGCTATAGCGgtgggacgcctttaatcctgtggaaacatcagcacatcctctaaccatcgctgagttaat-tagatgtttctcaatgtttccctgagatcaactgctaccacttatactaatttcacaccgtttggtgcag