1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatcaagtggcttttctgttattcactttcttttcttaatattataggtcagctaagcaggatgttgttgcatgttatgtcttag
species | Vitis vinifera |
transcript | Vv15s0048g02010.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAG ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACEST: gi|110688693|gb|EE067533.1|EE067533
genomic: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatc ... tatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTAC
EST: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAG ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACEST: gi|32249937|gb|CD715756.1|CD715756
genomic: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatc ... tatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTAC
EST: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAG ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAAATTAEST: gi|110732276|gb|EE107431.1|EE107431
genomic: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatc ... tatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAA-TTA
EST: CACTTTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAG ATTCTANGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACEST: gi|37189535|gb|CF608884.1|CF608884
genomic: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatc ... tatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTAC
EST: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAG ATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACEST: gi|27579903|gb|CB002598.1|CB002598
genomic: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatc ... tatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTAC
EST: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAG ATTCTAGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTAC
genomic: CACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatc ... tatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGgtttgctatcaagtggcttttctgttattcactttcttttcttaatattataggtcagctaagcaggatgttgttgcatgttatgtcttag
- - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - GGTGGA