1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCAAATGCTTGTGGGTGGGCATATGGAATGAACATTTTTGATCTCAAGGAGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtctttgaataaatctcgttttatttgcatgctttgtgtttttttcttttacaaacaattttttttcatgcatgtgaatgtttatgttatttgacc...
species | Vitis vinifera |
transcript | Vv15s0048g01300.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATG AATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATTEST: gi|71868441|gb|DT017496.1|DT017496
genomic: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtcttt ... gtggtgttagAATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATT
EST: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATG AATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATTEST: gi|71871353|gb|DT020408.1|DT020408
genomic: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtcttt ... gtggtgttagAATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATT
EST: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATG AATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATTEST: gi|77587009|gb|DV222643.1|DV222643
genomic: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtcttt ... gtggtgttagAATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATT
EST: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATG AATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATTEST: gi|37187340|gb|CF606693.1|CF606693
genomic: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtcttt ... gtggtgttagAATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATT
EST: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATG AATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATT
genomic: AGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtcttt ... gtggtgttagAATGAAGATAGGACGCTATGGAAGCTTGGAACATTGCCCCCTGGGCTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAATGCTTGTGGGTGGGCATATGGAATGAACATTTTTGATCTCAAGGAGTGGACAAGAAGGGATATTACTGGCATATATCATAAGTGGCAGAACATGgtgagtctttgaataaatctcgttttatttgcatgctttgtgtttttttcttttacaaacaattttttttcatgcatgtgaatgtttatgttatttgacc
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacaa