Sequence
atgc intronic sequence ATGC exonic sequenceACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaattggcatttgcatggtagaaagcatttttctgtatagctcaagttttcaaactggattacatgcttaataccttttaatgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G45360.1 (Glycine max), 5'ss of exon 12
-ACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaattggcatttgcatggtagaaagcatttttctgtatagctcaagttttcaaactggattacatgcttaat-accttttaatgca-----------------------------------
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ATCTACTCCATCACCTCGAACAGGAAAAGAGGGGAAACAAGATAATGGAGAGGTGACAGACAAGGATGATTATCTCTATTTTTG-TTTCCTTTATTGGCTGgtaaggacattgtattatgttccag--gcatgaattagagc--taatctagatagcttatattttgttactggctcaaatgattagcgactactttctgctatttgcaatcaacctttgtttctatttatatgaag
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 9
ACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaattggcatttg---catggtagaaag--catttttctgta-tagctcaagttttcaa--actggattaca-tgcttaatacc---ttttaatgca----------------------------------------------------------
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TCTGCTCCATCACCTCGAACAGGAAAAGAGGGGAAACAAGATAACGGAGAGGTGACAGACAAGGATGATCATCTCTATTTCTGGTTTCCTTTACTGGCTGgtaaggacattgtattaacatgaattagagctaatctagatagctcatattttgttactagctcaagtgattagcgactagtttctgctatttgcaatcaaactttgttttaagttgtatggagcttagtgggttatatatgtacttattcaaaacctatttttgtacag
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 9
ACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaa-ttggcatttgcatgg-tagaaagcattttt-------ctgtatagctcaagttttcaaactggattacatgcttaata--ccttttaatgca-----------------------------------------------------------------------
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TCTTCATCTTCACCTCAAACAAGAAAGGAGGGGAAAAAAGATAATGGAGAGGTGACTGACAAGGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCAGgtgaagagattatataaactttatctagacatgaatattgaatattcaggaaaaagttgtg-aatttatgtttcttaactttttcaaatgattagtgtttcttttgctaccatcttgctccatgtcttaagaagcttagtgtgttgcaaatgtacatgtacttatttgtcaactttctgcag
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 10
ACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaa-ttggcatttgcatgg-tagaaagcatttttctgtatagctcaagttttcaaactggattacatgcttaatac--cttttaatgca-----------------------------------------------------------------------
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TCTTCATCTTCACCTCAAACAGGAAAGGAGGGGAAAAAAGATAACGGAGAGGTGATTGACAAGGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCAGgtgaagacatgatataaagtttatctagacatgaatatttgggaaaaagttatg-aatttatgtttcttaactttttcgaatgattagtgcttcttttgctaccatcttgcttcatgtcttaagaagtttagcatgttgcaaatgtacatatacttatttgtctactttctgcag
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 9
ACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaatt-------ggcatttgcatggtagaaag--catttttctgtatagctcaagttttcaaactggattacatgc---ttaatacc-ttttaatgca------------------------------------------------------------
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TCTTCATCTTCAGCTCAAACAGGAAAGGAGGGGAAAAAAGATAACGGAGAGGTGATTGACAAGGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCAGgtgaagacatgatataaagtttatctagacatgaatattctggaaaagttatgaatttatgtttcttaactttttcgaatgattagtgtttcttttgctaccatcttgcttcatgtcttaagaagcttagcatgttgcaaatgtacatatacttatttgtctactttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721648|gb|FC069778.1|FC069778EST: GTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTG GGCTGTCAGAACTGAGCTTTGACCCAAGGCCTGAAATCAGAAAGAGTGCCC
genomic: GTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaa ... ctctgtgcagGGCTGTCAGAACTGAGCTTTGACCCAAGGCCTGAAATCAGAAAGAGTGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTCCATCTTCACCTCAAGCAGGAAAAGATCGGAAACATGACAATGGAGAGTTGACAGACAGGGATGATCATCTCTATTTTTGGTTCCCCCTGTTGGCTGgtaaagaaaatgcataaattggcatttgcatggtagaaagcatttttctgtatagctcaagttttcaaactggattacatgcttaataccttttaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa