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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttttattttgcacaattcatctcttgcaaaagtccccaccaaacttgtttgaccatgttgttctcttcatgctttgtatttgcttctacccca...

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os04g58580.1 (Oryza sativa), 5'ss of exon 9
GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaa-actttttattttgcacaattcatctcttgcaaa--agtccccaccaaacttgtttgaccatgttgttctct--tcatgctttgtatttgcttctacccca
|| ||||| |||||||||||||| || |||||||||||||| ||||| || ||||  |||||||| |||||||| || ||||| ||| |||| | |  |  | ||||   |||   |   ||| | |     |        || |  |||  ||||    | ||    | |  | || ||| ||||| | |    
GTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGgtgatatgtactctttttagcaaaaaagtgcttcctactttatgtgtggttaagtattttatccatacaatgctagaataacaccttatatatgctt-tgc----

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 10
GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaa----actttttattttgcacaattc----atctcttgcaaaagtccccaccaaacttgtttgac------catgttgttctcttcatgctttgtattt-gct--tctacccca-------------------------
|| || |||||||| |||||||| || || ||||||||||| ||||| || ||||  |||||||| |||||||| ||||| || ||| |||| |    || | |   ||   |  |  |    ||   ||    |  |    ||      || ||         ||  ||  |     || |  || ||||| | |  | || |  |                         
GTATTTCCCCAAGGTTGGGACAAAACTTATTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGATAAGACCTACAAGgtgatatgacatctagcttattaggacccccaaataatttatgtatatttttacattttctggttagtgaccagcagcttaattataacacggcttttattttggtaatttatcttactaattcttgttttccatcgaacag

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G39800.1 (Glycine max), 5'ss of exon 10
GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttttattttg-cacaattcatctcttgcaaaagtccccaccaaacttgtttgaccatgttgttctcttcatgctt-tgtatttgcttctacccca
|||||||| ||||| |||||||| ||||||||| ||||||||||||||| |||   |||||| ||||||||||| || ||||| ||| ||||||     | | |||  ||      |  | ||    |  ||    | | |  |     |   | |   || || ||| | | ||    | ||| ||     
GTTTTCCCTCAAGGTTGGGACAAAACATACTGCCTGAGATACCTTGATGGTTTCAATGAAATTCACTTCTTTGGTGACAAAACTTACAAGgtaagtccataagtttatcatggagtacatttttggcatatcaaatcaacatcttacacattttctgcctccctgcatacatatgctagttcttgtattt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415834|gb|EC981772.1|EC981772
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAAAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     CCTTGATGATTTTCCTGAAATCCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACGATGAGATTTATGAA
genomic: CCTTGATGATTTTCCTGAAATCC-ACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAA
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     CCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAAG                         GAAG-AAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACAC
genomic: CCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGA-Ggtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACAC
EST: gi|110702531|gb|EE081351.1|EE081351
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|71870941|gb|DT019996.1|DT019996
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|30254563|gb|CB971308.1|CB971308
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAA-CATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|71867011|gb|DT016066.1|DT016066
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110693362|gb|EE069529.1|EE069529
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|30253435|gb|CB970986.1|CB970986
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACCCA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110377595|gb|EC942672.1|EC942672
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACCAG                         GGAGGAAATGACCATGAGATTTATGAATCAAAACGGACTGTGGGTCAC
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCAC
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGGAAATGACCATGAGATTTATGAATC-GANACGGACTGTGGGTCACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGG-AAATGACCATGAGATTTATGAATCAGA-ACGGACTGTGGGTCACA
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     CTTGATGATTTTCCTGAAATCCACTTCTTTTGGCGATAAAACATACCGAG                         GGAAGAAATGAC
genomic: CTTGATGATTTTCCTGAAATCCACTTCTTT-GGCGATAAAACATAC-GAGgtaaactttt ... ttttgagcagGCAGGAAATGAC
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACCAG                         GGAGGAAATGACCATGAGATTTAT
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTAT
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGT
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGT
EST: gi|33408487|gb|CF214114.1|CF214114
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGAGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|32246999|gb|CD712818.1|CD712818
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATG
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATG
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAAGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|34364395|gb|CF405980.1|CF405980
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     CCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAA-CATACGACG                         G-AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACAC
genomic: CCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGA-Ggtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACAC
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAA-CATACGAG                         GCAGGAA-TGACCATGAGATT-ATGAATCAGA-CGGAC
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGAC
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATG
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATG
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110725007|gb|EE101335.1|EE101335
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|33406730|gb|CF212357.1|CF212357
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACAAG                         GGAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGAGTCACACA
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACA
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG                         GGGAG-AAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACAC
genomic: ACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttt ... ttttgagcagGC-AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAGgtaaactttttattttgcacaattcatctcttgcaaaagtccccaccaaacttgtttgaccatgttgttctcttcatgctttgtatttgcttctacccca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacccc