Sequence
atgc intronic sequence ATGC exonic sequenceATCCCCACTTGGTGAAGCTTGCTCAAGAATGGACTTGACTGCCATACATGAGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAGgttaggatacattacattatgaaaaatttacttagtaggtctcactgttgtttcatggttagtcttgttgcatcatttagtcatagttgttcatcaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 9
ATCCCCACTTGGTGAAGCTTGCTCAAGAATGGACTTGACTGCCATACATGAGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAGgttagg---atacattacattatgaaaaatttacttagtaggtctcactgttgtttcatggttagtcttgttgcatcatttagtcatagttgttc-atcaaaaa--------------------------------------------------------------------------------
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ATCTCCACTTGGTGAAGCATGCTCAAGAAAAGACTTGACTGCCATACAAGAAGTTCTGGAAAGTATTGGCTATAAAGATGACGAAGGAGTGGCAAATGAGgttcgctatctaatttatattttactgaattgccgtataccttttaatcttttctgtaaaatcttgattatt-tattaatttattatatttcttccagtacaaacgatgaaataataacatatatatatattctttaaaagaggctaacttgtgtattctctctactcttttctggtattgcag
upper sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 9
ATCCCCACTTGGTGAAGCTTGCTCAAGAATGGACTTGACTGCCATACATGAGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAGgtt---aggatacattacattatgaaaaatttacttagtaggtctcactgttgtttcatggttagtcttgttgcatcatttagtcatagttgttcatcaaaaa---------------------------------------------------------------------------------------------
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ATCTCCTCTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAGgttctctatctaaattatattttactgaaatgcctcataccttttcatttttcctgtaaaaccttgattatttattaatttatttatttcttctcggggttatctttttccagcgatgaaacaataacaaatataatatatttattctttaaaggaggctaacttgtgtattctctctactattctggtattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110400308|gb|EC966866.1|EC966866EST: AGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAG CTTTCGTTCCAAATGTGGACTGATCAAATGCAGGAGACATTAAATTCTAAG
genomic: AGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAGgttaggatac ... aacactgcagCTTTCGTTCCAAATGTGGACTGATCAAATGCAGGAGACATTAAATTCTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCCCCACTTGGTGAAGCTTGCTCAAGAATGGACTTGACTGCCATACATGAGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAGgttaggatacattacattatgaaaaatttacttagtaggtctcactgttgtttcatggttagtcttgttgcatcatttagtcatagttgttcatcaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa