Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgtaatttagttatctatctgtttgcatgtgatccaagttgatttgttatatctaaaatgcatgtaatgggctaatttaattcttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA03G01210.1 (Glycine max), 5'ss of exon 9
TGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgtaatttagttatctatctgtttgcatgtgatccaagtt----gatttgttatatctaaaatgcatgtaa---tgggctaatttaattcttcag------
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CCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTCAAGGAAAGTGGATGGAATTCAAAAAGGAAATGTCATATTCACTCTGATGGCTTCATTTCAAgtaatctatattcttcttgacttagaaaaatttaaatttttagtaattattttgttttctgtagttgtgaacctagccttgttgtgccctccctccctct
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G46610.1 (Glycine max), 5'ss of exon 9
TGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgtaat--ttagttatctat-----ctg--tttgcatgtgatccaagttgatttgttatatcta-aaatgca----tgtaatgggctaatttaattcttcag
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-CAAGTTAAGCGTCTCCGTGATGGGAAGAGTTTTGCTACTAGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACGtaatcctcaattcctcattcttcctgacttggaataagataaaatttcagtaattttttctgtgtattcaactgtgaatctggctaagttatgctttttc
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G46620.1 (Glycine max), 5'ss of exon 7
TGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgtaat--ttagttatctatctgt--ttgcatgtgatccaagttgatttgttatatctaaaatgcatgtaatgggctaatt-taattcttcag--------
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TCAAGTTTATCGTCTCCGTGATGGGAAGAGTTTTGCTACTAGGAAAGTGGATGCGATTCAAAAGGGACATATCATATTCACTTTGCTGGCTTCATTTCAGgtaatcctcaatttttgacttggaataagataaaatttcagtcatttttcagttttttttagctttgaatctggctaattatgctttctctcgatttcat
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G01710.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgta----atttagttatctatctgtttgcatgtga---tccaagttgatttgttat--atctaaaatg------catgtaatgggctaatttaattcttcag-------------------------
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TCAAGTTCACCGCATACGTGATGGGAACAACTTTGCCACCCGAAGAGTTGATGCAGTACAGAAAGGAAATATCATATTCATCTTGCTGGCATCATTTCAGgtttcccattttattctttacaagatagcttatgaatctctacgtccacctgccaccaagagagaatagcctttcacaaaactgggaaaattgttttcttaaattttctcttttattactttcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720865|gb|FC070980.1|FC070980EST: ATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAA AAAGAAGAAGAAGGGTTTGATCACCAGGTAGCGACTATGCCATCTGTGCCT
genomic: ATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgtaatttagt ... aattcttcagAAAGAAGAAGAAGGGTTTGATCACCAGGTAGCGACAATGCCATCTGTGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCTTGCTTCATTTCAAgtaatttagttatctatctgtttgcatgtgatccaagttgatttgttatatctaaaatgcatgtaatgggctaatttaattcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA