Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGGACAGGTCAACCGTTGTGCATTTATGAGCCTTACTTTGGGGAAGGAACTTGGCCTTTTTTGCATGCTACTTCACTTTATCGAGGAATTGGGCTGgtgagttacaaatgatgttaatgtttttatggataccttcttttatatcaaatgatgcagtagatgggatcagtggtggccttgtatgctagactagttgtttttcttacagttgatggaatctatataaaagatgaaatttttttctccgatctgatctggatccatggaattgatgattgtag

Basic information

species Vitis vinifera
transcript Vv15s0046g01620.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 9
TGAAAGGACAGGTCAACCGTTGTGCATTTATGAGCCTTACTTTGGGGAAGGAACTTGGCCTTTTTTGCATGCTACTTCACTTTATCGAGGAATTGGGCTGgtgagttacaaatgatgttaatgtttttatggataccttcttttatatcaaatgatgcagtagatgggatc-agtggtggccttgtatgctagactagttgtttttcttacagttgatggaatctatataaaagatgaaatttttttctccgatctgatctggatccatggaattgatgattgtag
|||  ||||||| |||||| | ||||||||||| ||||| |||||||||||| | ||| ||||| | |||   |  || ||||||||||||||||| ||||| ||||     || |  || | | | ||    |      || ||| ||| |   |  | |   |||  ||   |      ||  |    |    || | | | ||  | |||                                                                         
TGAGCGGACAGGACAACCGCTATGCATTTATGAACCTTATTTTGGGGAAGGATCCTGGTCTTTTCTACATCAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgtgtgtgcttgtattttctgtaatagttgtgctttctat-tcagaacttataatgagtggcttctgatttcaatctgatgcaatgatgtactggatgtt--tgcag-------------------------------------------------------------------------

upper sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G06780.1 (Glycine max), 5'ss of exon 9
TGAAAGGACAGGTCAACCGTTGTGCATTTATGAGCCTTACTTTGGGGAAGGAACTTGGCCTTTTTTGCATGCTACTTCACTTTATCGAGGAATTGGGCTGgtgagttacaaatgatgttaatgtttttatggataccttcttttatatcaaatgatgcagtagatgggatcagtggtggccttgtatgctagactagttgtttttcttacagttgatggaatctatataaaagatgaaatttttttctccgatctgatctggatccatggaattgatgattgtag
|||  ||||||| |||||| | ||||| ||||| ||||| |||||||||||| | ||||||||| | |||   |  || ||||||||||||||||| ||||| ||||     || || |    |||| ||       ||  |  || |       ||||   |||   ||   |  ||| ||||| |   | |   | | | ||                                                                                 
TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttg--ggtg-tgcttgcattttcata------ttaatccatgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag----------------------------------------------------------------------------