Sequence
atgc intronic sequence ATGC exonic sequenceCGTTATTCTTGACATGCCTTAAGGACTTTGCTGATTTTGCCAATTCCAAGGATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAAgtaagtttctttttaatcagccataaactatgcattcctttgcatgttcaatgagaaatattttcatattgaattgttgaaatgtgtatgctcttgatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 9
CGTTATTCTTGACATGCCTTAAGGACTTTGCTGATTTTGCCAATTCCAAGGATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAAgtaagtttctttttaatcagccataaactatgcattcctttgcatgttcaatgagaaatattttcatattgaattgttgaaatgtgtatgc-tcttgatta
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CATTGTTTTTAGCATGCCTCAAGGATTTTGCAGACTTTGCCAAATCCAAGGATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgttactacatttaatatttttatttatggcacagtgttttatctttgggtgctgtgtgggcatttattgccttggatacagaggaatctttctt-
upper sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 9
CGTTATTCTTGACATGCCTTAAGGACTTTGCTGATTTTGCCAATTCCAAGGATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAAgtaagtttctttttaatcagccataa--actatgcattcctttgcat--gttcaatgagaaatattttcatattgaattgttgaaatgtgtatgctcttgatta
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CTTTGTTTTTAGCATGCCTCAAGGATTTCGCAGACTTTGCCAAATCTAAGGATCAAGAGAATAACATCCCACCTGAGAAATGTTTCAAATTGCCTTACAAgtaagtgttactacatatatttttatttatggcacattatttatctttgggtcttgtgggcatttgtttgcattggatac---agaggaatttttctttggtg-
upper sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G61710.1 (Arabidopsis thaliana), 5'ss of exon 9
CGTTATTCTTGACATGCCTTAAGGACTTTGCTGATTTTGCCAATTCCAAGGATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAAgtaagtttctttttaatcag-ccataaactatgcattcctttgcatgttc-----aatgagaaatattttcatattgaattgttgaaatgtgtatgctcttgatta---
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CACTGTATTTGATGTGTCTTAAAGACTTTGCTGATTTTGCAAATTCAAAGGACCAAGAGAACAATATTCCACCAGATAATTGCCTCAACCTTCCATACAAgcaagtccccattcttttagaccaaaatctttgtcgtcgcttatctttttttgttaatgggtgcaatggaaaaacttacaagtttct-catataaaatcttttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110724261|gb|EE099932.1|EE099932EST: GATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAA GATTGAGAACGACAAAGTGGAAAACTACTCCATCACTCAGAGCTTCAACAA
genomic: GATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAAgtaagtttct ... ggtcttgcagGATTGAGAACGACAAAGTGGAAAACTACTCCATCACTCAGAGCTTCAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTTATTCTTGACATGCCTTAAGGACTTTGCTGATTTTGCCAATTCCAAGGATCAAGAGAACAACATTCCACCAGAGAAATGTTTCAAGCTGCCTTATAAgtaagtttctttttaatcagccataaactatgcattcctttgcatgttcaatgagaaatattttcatattgaattgttgaaatgtgtatgctcttgatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaa