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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATGATGATCTCATGAAGGCATTTTCAGAACGCAACAAGgtacatgatcaatgcactgattcctgtgttctgatgaattgactcttttaatctagctatgaggtttgaccttgcaggatatatcatttcatgatatagtttgtgttgaatttcctttggactaactacttgctatgttctataaccaacttcctacacgccctgcag

Basic information

species Vitis vinifera
transcript Vv15s0046g00740.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 9
GCTTATGATGATCTCATGAAGGCATTTTCAGAACGCAACAAGgtacatgatcaatgcactgattcctgtg---ttctgatgaattgactc--ttttaatctagctatgaggtttgaccttgcaggatatatcatttca------tgatatagtttgtgttgaatttcctttggactaactacttgct-atgttctataaccaacttcctacacgccctgcag
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GCTTTCGATGATCTCTTGAAGGCATTTTCAGAACGTAACAAGgtat-tgggaaactttttggctcgtcttcattttttattcattgcacaaaatttggtataactaacaaaaagaaccagagaacatgtttgacttctattgttccatgtaaatcttgttcactgtcgtcaacattg--tatttatttgtgctctctgccccatttttt---tgtctt-cag

upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 7
GCTTATGATGATCTCATGAAGGCATTTTCAGAACGCAACAAGgtacatga-----tcaatgcactgattcctgtgttctgatgaattgactcttttaatctagctatgaggtttgaccttgcaggatatatcatttcatgatatagtttgtgttgaatttcctttggactaactacttgctatgttctataaccaacttcctacacgccctgcag
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GCTTTCGATGATCTCTTGAAGGCATTTTCAGAACGTAACAAGgtattggaaacttttaaggcacaaaatttggtat---aacaaaaagaaccatagaacat--ctttgacttctattgttccatg-tacatcttgtt-cactgtcgtcaacattgtatttatttgtgctctgtcccattttcttgtcttcag-----------------------