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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCAACCTCCTAATCCCTGGACCATGGGTATTCTTGGATTACTTGCTGAGATCTATGTACTGCCAAATTTGAAAATGAACCTAAAGTTTGACATTGAGgtacacaattgctattattgctcatttggctgaatttagcacttagattctgtatttatttatgtatgtgccatatccattttgtgtttcag

Basic information

species Vitis vinifera
transcript Vv15s0021g02580.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02580.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ17138 (Selaginella moellendorffii), 5'ss of exon 20
ATATCAACCTCCTAATCCCTGGACCATGGGTATTCTTGGATTACTTGCTGAGATCTATGTACTGCCAAATTTGAAAATGAACCTAAAGTTTGACATTGAGgtacacaattgctattattgctcatttggctgaatttagcacttagattctgtatttatttatgtatgtgccatatccattttgtgtttcag
 ||||||||||||||||||||||| ||||| ||||| ||  | ||  | || || ||||  || || || || || |||||||| || ||||||||||||||   || | |  | ||     |||||   | ||||    |  |   |||| | ||  || |                              
GTATCAACCTCCTAATCCCTGGACAATGGGCATTCTGGGCCTTCTATCCGAAATTTATGCGCTTCCGAACTTAAAGATGAACCTGAAATTTGACATTGAGgt---cagtcgtaagta-----cattt---taaattgtaaatcttt-ttctatgttgtttcag-----------------------------

upper sequence: Vv15s0021g02580.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ31209 (Selaginella moellendorffii), 5'ss of exon 20
ATATCAACCTCCTAATCCCTGGACCATGGGTATTCTTGGATTACTTGCTGAGATCTATGTACTGCCAAATTTGAAAATGAACCTAAAGTTTGACATTGAGgtacacaattgctattattgctcatttggctgaatttagcacttagattctgtatttatttatgtatgtgccatatccattttgtgtttcag
 ||||||||||||||||||||||| ||||||||||| ||  | ||  | || || ||||  || || || || || |||||||| || ||||||||||||||   || | |  | ||     |||||   | ||||    |  |   | || | ||  || |                              
GTATCAACCTCCTAATCCCTGGACAATGGGTATTCTGGGCCTTCTATCCGAAATTTATGCGCTTCCGAACTTAAAGATGAACCTGAAATTTGACATTGAGgt---cagtcgtaagta-----cattt---taaattgtaaatcttt-tcctatgttgtttcag-----------------------------