Sequence
atgc intronic sequence ATGC exonic sequenceGTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtttttgcttgacacattcacctcactagcatatgcaaatgcaattattagttttttctccttgagagggtaggccaaacaaatcctttgggagtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 9
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtttttgcttgacacattcacc----tcactagcatatgcaa-----atgcaattatt--agtt--ttttctccttgagagggtaggccaaacaaatcctttgggagtc---------------------
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GTTCCTCGCTTGGTAAGGATGCACTCCAATGAGATGGAGgtaagttgc-accagatgttgtaaccaaaataattactaagtattagtttgatctgatcattggagttgattgtttcctttataagcaaatccacccctaggctaatatcttctttattctgtggtcaatatag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G056393_T01 (Zea mays), 5'ss of exon 9
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtt---tttgcttgacacattcacctcactagcat--atgcaaatgcaattattagttttttctccttgag-agggtaggccaaacaaatcctttgggagtc-
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GTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAGgtaagttgcattagattta-gttttcactcaatcagtattgatttccatcagatgaagatcagtgattttttgggtattaatgtttatattattttgtttgatatag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 9
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtttttgcttgacacattcacctcactag--catatgcaaatgcaattattagttttttctccttgagagggtaggcca-aacaa-atcctttgggagtc
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GTTCCTCGCTTGGTTCGGATGCATTCTGATGAGATGGAGgtttgtttttaga-gtttcagtatccctattaagttgaatgcccctggaaacagtgtttttttttaaaagggagtaagagttataataagatacttttttt---
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 4
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagttttt-gcttgacacattcacctcactagcatatgcaaatgcaattattagttttttctccttgagagggtaggccaaacaaatcctttgggagtc
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GTTCCTCGTTTGGTTCGGATGCATTCTGATGAGATGGAGgtttgttttttgagtttcagtattcctatgaagttgaatgcccctggaaacagttttttttttgttttta-attattttttaaaggtagtaagaggtataa
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtttttgcttgacacattcacctcactagcatatgcaaatgcaattattagttttttctccttgagagggtaggccaaacaaatcctttgggagtc---------
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GTTCCACGCTTGGTCCGTATGCATTCAAATGATATGGAGgttagttgaagtttattt--ttctcctta--agattccattatggtagctccgtggtggcaactctagtgccatgtggctgaattctatttttttaattctattttcag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtttttgcttgacacattcacctcactagcat-atgcaaatgcaat--tattagttttttctccttgagagggtaggccaaacaaatcctttgggagtc-
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GTTCCACGCTTGGTCCGTATGCATTCGAATGATATGGAGgttagttgaagtttatttttctccttaagattccattatggtagctccgtggtggcaactatagtgccatgtgactggattctaaatttttattctattttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863690|gb|DT012745.1|DT012745EST: GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAG GACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGAT
genomic: GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagttttt ... aattctacagGACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGgttagtttttgcttgacacattcacctcactagcatatgcaaatgcaattattagttttttctccttgagagggtaggccaaacaaatcctttgggagtc
- - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa